Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p04330 Brassica napus HOM05D002040 ORTHO05D033277 2.9e-188 661.8 335 100.0
BraA10t42700Z Brassica rapa HOM05D002040 ORTHO05D033277 4.3e-184 647.9 335 98.2
C05p04190 Brassica napus HOM05D002040 ORTHO05D033277 1.0e-89 334.3 252 72.2
BolC5t29194H Brassica oleracea HOM05D002040 ORTHO05D002502 2.8e-82 309.7 252 67.9
AL7G28390 Arabidopsis lyrata HOM05D002040 ORTHO05D002502 2.5e-14 84.0 51 76.5
Sp7g22780 Schrenkiella parvula HOM05D002040 ORTHO05D002502 3.2e-14 83.6 52 75.0
Carub.0007s1626 Capsella rubella HOM05D002040 ORTHO05D002502 5.5e-14 82.8 51 72.5
CARHR232190 Cardamine hirsuta HOM05D002040 ORTHO05D002502 5.5e-14 82.8 51 74.5
A01p16110 Brassica napus HOM05D002040 ORTHO05D002502 7.2e-14 82.4 51 74.5
BraA01t01547Z Brassica rapa HOM05D002040 ORTHO05D002502 7.2e-14 82.4 51 74.5
Thhalv10024556m.g Eutrema salsugineum HOM05D002040 ORTHO05D002502 7.2e-14 82.4 51 74.5
AT4G24800 Arabidopsis thaliana HOM05D002040 ORTHO05D002502 1.6e-13 81.3 51 74.5
C01p20100 Brassica napus HOM05D002040 ORTHO05D002502 2.7e-13 80.5 51 72.5
Aa31LG7G11040 Aethionema arabicum HOM05D002040 ORTHO05D002502 4.7e-13 79.7 127 38.6
BcaC05g24649 Brassica carinata HOM05D002040 ORTHO05D019973 6.1e-13 79.3 102 45.1
BolC1t01939H Brassica oleracea HOM05D002040 ORTHO05D002502 6.1e-13 79.3 51 72.5
Potri.015G088300 Populus trichocarpa HOM05D002040 ORTHO05D002502 1.8e-12 77.8 51 70.6
unitig_26.g9611 Utricularia gibba HOM05D002040 ORTHO05D002502 3.0e-12 77.0 112 40.2
BcaC06g34655 Brassica carinata HOM05D000888 ORTHO05D000740 3.9e-12 76.6 53 75.5
arahy.Tifrunner.gnm1.ann1.MT8Q6Z Arachis hypogaea HOM05D002040 ORTHO05D002502 6.7e-12 75.9 51 66.7
arahy.Tifrunner.gnm1.ann1.VJWP7R Arachis hypogaea HOM05D002040 ORTHO05D002502 6.7e-12 75.9 51 66.7
Ciclev10019069m.g Citrus clementina HOM05D002040 ORTHO05D002502 6.7e-12 75.9 51 70.6
Lj4g0014559 Lotus japonicus HOM05D002040 ORTHO05D002502 1.1e-11 75.1 51 66.7
Ca_26533_v3 Cicer arietinum L. HOM05D002040 ORTHO05D002502 2.0e-11 74.3 51 64.7
PGR044G0305 Punica granatum HOM05D002040 ORTHO05D002502 2.0e-11 74.3 51 64.7
Sabra15G0111300 Salix brachista HOM05D002040 ORTHO05D002502 2.6e-11 73.9 51 66.7
TWI39G0160 Tripterygium wilfordii HOM05D002040 ORTHO05D002502 2.6e-11 73.9 51 62.7
COL.COLO4_04550 Corchorus olitorius HOM05D002040 ORTHO05D002502 4.4e-11 73.2 55 63.6
TWI09G0592 Tripterygium wilfordii HOM05D002040 ORTHO05D002502 4.4e-11 73.2 51 62.7
Psat4g065880 Pisum sativum HOM05D002040 ORTHO05D002502 5.7e-11 72.8 51 62.7
Thecc.03G120700 Theobroma cacao HOM05D002040 ORTHO05D002502 5.7e-11 72.8 51 66.7
TPR.G37510 Trifolium pratense HOM05D002040 ORTHO05D002502 5.7e-11 72.8 51 62.7
Atru.chr9.987 Acer truncatum HOM05D002040 ORTHO05D002502 7.4e-11 72.4 46 71.7
Glyma.04G191500 Glycine max HOM05D002040 ORTHO05D002502 7.4e-11 72.4 127 36.2
Sabra12G0066600 Salix brachista HOM05D002040 ORTHO05D002502 7.4e-11 72.4 51 66.7
Sed0025036 Sechium edule HOM05D002040 ORTHO05D002502 9.7e-11 72.0 46 71.7
Eucgr.K02766 Eucalyptus grandis HOM05D002040 ORTHO05D002502 1.3e-10 71.6 51 64.7
Medtr4g104360 Medicago truncatula HOM05D002040 ORTHO05D002502 1.3e-10 71.6 51 62.7
THA.LOC104810249 Tarenaya hassleriana HOM05D002040 ORTHO05D002502 1.3e-10 71.6 51 62.7
THA.LOC104825001 Tarenaya hassleriana HOM05D002040 ORTHO05D002502 1.3e-10 71.6 51 62.7
CsaV3_1G009180 Cucumis sativus L. HOM05D002040 ORTHO05D002502 1.7e-10 71.2 46 69.6
Gohir.A03G063000 Gossypium hirsutum HOM05D002040 ORTHO05D002502 1.7e-10 71.2 51 62.7
Gohir.A07G054100 Gossypium hirsutum HOM05D002040 ORTHO05D002502 1.7e-10 71.2 51 64.7
Lj9A473G60 Lonicera japonica HOM05D002040 ORTHO05D002502 1.7e-10 71.2 46 69.6
Nn4g22509 Nelumbo nucifera HOM05D002040 ORTHO05D002502 1.7e-10 71.2 52 61.5
Gohir.D03G103300 Gossypium hirsutum HOM05D002040 ORTHO05D002502 2.2e-10 70.9 51 64.7
Gorai.003G108800 Gossypium raimondii HOM05D002040 ORTHO05D002502 2.2e-10 70.9 51 64.7
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.8e-10 70.5 46 67.4
Peaxi162Scf00089g00936 Petunia axillaris HOM05D002040 ORTHO05D002502 2.8e-10 70.5 54 59.3
TWI14G0866 Tripterygium wilfordii HOM05D002040 ORTHO05D002502 2.8e-10 70.5 51 64.7
VMungo1215G0408 Vigna mungo HOM05D002040 ORTHO05D002502 2.8e-10 70.5 51 60.8
Actinidia16201 Actinidia chinensis HOM05D002040 ORTHO05D002502 3.7e-10 70.1 46 67.4
ClCG03G003370 Citrullus lanatus HOM05D002040 ORTHO05D002502 3.7e-10 70.1 46 69.6
Oeu049133.1 Olea europaea HOM05D002040 ORTHO05D002502 3.7e-10 70.1 64 57.8
HPP92_006210 Vanilla planifolia HOM05D002040 ORTHO05D002502 3.7e-10 70.1 103 36.9
MELO3C002324.2 Cucumis melo HOM05D002040 ORTHO05D002502 4.8e-10 69.7 46 67.4
Gohir.D07G058500 Gossypium hirsutum HOM05D002040 ORTHO05D002502 4.8e-10 69.7 51 62.7
Gorai.001G062000 Gossypium raimondii HOM05D002040 ORTHO05D002502 4.8e-10 69.7 51 62.7
Actinidia19374 Actinidia chinensis HOM05D002040 ORTHO05D002502 6.3e-10 69.3 54 59.3
Duzib068G1401 Durio zibethinus HOM05D002040 ORTHO05D002502 6.3e-10 69.3 51 58.8
MD14G1166300 Malus domestica HOM05D002040 ORTHO05D002502 6.3e-10 69.3 51 56.9
Sc04g0001040 Simmondsia chinensis HOM05D002040 ORTHO05D002502 6.3e-10 69.3 46 69.6
Aqoxy5G03621 Aquilegia oxysepala HOM05D002040 ORTHO05D002502 8.2e-10 68.9 54 59.3
AT5G63190 Arabidopsis thaliana HOM05D002040 ORTHO05D002502 8.2e-10 68.9 51 58.8
Dinv38488 Davidia involucrata HOM05D002040 ORTHO05D002502 8.2e-10 68.9 46 65.2
Duzib205G1068 Durio zibethinus HOM05D002040 ORTHO05D002502 8.2e-10 68.9 51 62.7
Potri.012G091900 Populus trichocarpa HOM05D002040 ORTHO05D002502 8.2e-10 68.9 51 66.7
CAN.G472.47 Capsicum annuum HOM05D002040 ORTHO05D002502 1.1e-09 68.6 46 65.2
CAN.G472.48 Capsicum annuum HOM05D002040 ORTHO05D002502 1.1e-09 68.6 54 59.3
Glyma.17G126700 Glycine max HOM05D002040 ORTHO05D002502 1.1e-09 68.6 46 67.4
MD06G1160300 Malus domestica HOM05D002040 ORTHO05D002502 1.1e-09 68.6 51 56.9
Phvul.003G207600 Phaseolus vulgaris HOM05D002040 ORTHO05D002502 1.1e-09 68.6 51 58.8
Migut.O00223 Erythranthe guttata HOM05D002040 ORTHO05D002502 1.4e-09 68.2 55 63.6
Nitab4.5_0001360g0090 Nicotiana tabacum HOM05D002040 ORTHO05D002502 1.4e-09 68.2 46 63.0
CSS0003328 Camellia sinensis var. sinensis HOM05D002040 ORTHO05D002502 1.8e-09 67.8 54 55.6
Oeu053503.1 Olea europaea HOM05D002040 ORTHO05D002502 1.8e-09 67.8 64 56.2
Prupe.5G160100 Prunus persica HOM05D002040 ORTHO05D002502 1.8e-09 67.8 51 56.9
Rhsim08G0183000 Rhododendron simsii HOM05D002040 ORTHO05D002502 1.8e-09 67.8 54 57.4
Sed0021106 Sechium edule HOM05D002040 ORTHO05D002502 1.8e-09 67.8 46 67.4
CSS0016266 Camellia sinensis var. sinensis HOM05D002040 ORTHO05D002502 2.4e-09 67.4 54 55.6
CSS0047587 Camellia sinensis var. sinensis HOM05D002040 ORTHO05D002502 2.4e-09 67.4 54 55.6
RcHm_v2.0_Chr7g0191511 Rosa chinensis HOM05D002040 ORTHO05D002502 2.4e-09 67.4 53 56.6
vmacro19256 Vaccinium macrocarpon HOM05D002040 ORTHO05D002502 2.4e-09 67.4 54 57.4
Migut.D02040 Erythranthe guttata HOM05D002040 ORTHO05D002502 3.1e-09 67.0 54 59.3
Glyma.05G044200 Glycine max HOM05D002040 ORTHO05D002502 3.1e-09 67.0 46 65.2
HanXRQChr05g0156131 Helianthus annuus HOM05D002040 ORTHO05D002502 3.1e-09 67.0 48 58.3
HanXRQChr05g0158441 Helianthus annuus HOM05D002040 ORTHO05D002502 3.1e-09 67.0 46 63.0
Lsat_1_v5_gn_5_13080 Lactuca sativa HOM05D002040 ORTHO05D002502 3.1e-09 67.0 43 67.4
Lalb_Chr12g0202051 Lupinus albus HOM05D002040 ORTHO05D002502 3.1e-09 67.0 51 60.8
Ah.08g218320 Amaranthus hybridus HOM05D002040 ORTHO05D002502 4.1e-09 66.6 46 65.2
ATR0824G002 Amborella trichopoda HOM05D002040 ORTHO05D002502 4.1e-09 66.6 46 65.2
C05p04940 Brassica napus HOM05D002040 ORTHO05D019973 4.1e-09 66.6 69 47.8
BolC5t29266H Brassica oleracea HOM05D002040 ORTHO05D019973 4.1e-09 66.6 69 47.8
Cc04_g10670 Coffea canephora HOM05D002040 ORTHO05D002502 4.1e-09 66.6 46 65.2
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 4.1e-09 66.6 46 63.0
Carub.0008s2395 Capsella rubella HOM05D002040 ORTHO05D002502 5.3e-09 66.2 51 56.9
Hma1.2p1_0014F.1_g009970 Hydrangea macrophylla HOM05D002040 ORTHO05D002502 5.3e-09 66.2 45 66.7
Manes.06G113600 Manihot esculenta HOM05D002040 ORTHO05D002502 5.3e-09 66.2 46 65.2
Manes.14G056036 Manihot esculenta HOM05D002040 ORTHO05D002502 5.3e-09 66.2 51 60.8
Nitab4.5_0002531g0120 Nicotiana tabacum HOM05D002040 ORTHO05D002502 5.3e-09 66.2 46 60.9
CiPaw.11G013500 Carya illinoinensis HOM05D002040 ORTHO05D002502 7.0e-09 65.9 46 63.0
AUR62025749 Chenopodium quinoa HOM05D002040 ORTHO05D002502 7.0e-09 65.9 46 63.0
ECA246G0233 Erigeron canadensis HOM05D002040 ORTHO05D002502 7.0e-09 65.9 46 60.9
Sp5g13660 Schrenkiella parvula HOM05D002040 ORTHO05D002502 7.0e-09 65.9 54 57.4
Lj5A101G108 Lonicera japonica HOM05D002040 ORTHO05D002502 9.1e-09 65.5 52 55.8
Nitab4.5_0002531g0080 Nicotiana tabacum HOM05D002040 ORTHO05D002502 9.1e-09 65.5 46 60.9
Oeu045489.1 Olea europaea HOM05D002040 ORTHO05D002502 9.1e-09 65.5 54 59.3
SGA_v2.0_scaffold25G10787 Striga asiatica HOM05D002040 ORTHO05D002502 9.1e-09 65.5 56 57.1
AUR62001259 Chenopodium quinoa HOM05D002040 ORTHO05D002502 1.2e-08 65.1 46 63.0
Haze_07290 Corylus avellana HOM05D002040 ORTHO05D002502 1.2e-08 65.1 46 60.9
QL10p005613 Quercus lobata HOM05D002040 ORTHO05D002502 1.2e-08 65.1 46 63.0
Solyc03g111630.4 Solanum lycopersicum HOM05D002040 ORTHO05D002502 1.2e-08 65.1 54 55.6
Sopen03g030760 Solanum pennellii HOM05D002040 ORTHO05D002502 1.2e-08 65.1 54 57.4
THA.LOC104818201 Tarenaya hassleriana HOM05D002040 ORTHO05D002502 1.2e-08 65.1 55 54.5
TAR629G0161 Trochodendron aralioides HOM05D002040 ORTHO05D002502 1.2e-08 65.1 54 53.7
CANSAT80G1622 Cannabis sativa HOM05D002040 ORTHO05D002502 1.5e-08 64.7 51 58.8
CARHR043640 Cardamine hirsuta HOM05D002040 ORTHO05D002502 1.5e-08 64.7 46 60.9
CiPaw.12G034300 Carya illinoinensis HOM05D002040 ORTHO05D002502 1.5e-08 64.7 46 63.0
Thhalv10003735m.g Eutrema salsugineum HOM05D002040 ORTHO05D002502 1.5e-08 64.7 54 53.7
Sopen03g030750 Solanum pennellii HOM05D002040 ORTHO05D002502 1.5e-08 64.7 54 53.7
EL10Ac7g18050 Beta vulgaris HOM05D002040 ORTHO05D002502 2.0e-08 64.3 46 60.9
DCAR_021601 Daucus carota HOM05D002040 ORTHO05D002502 2.0e-08 64.3 51 58.8
AL5G27790 Arabidopsis lyrata HOM05D002040 ORTHO05D002502 2.6e-08 63.9 54 51.9
A06p29920 Brassica napus HOM05D002040 ORTHO05D002502 2.6e-08 63.9 51 54.9
C03p63440 Brassica napus HOM05D002040 ORTHO05D002502 2.6e-08 63.9 51 54.9
BraA06t25943Z Brassica rapa HOM05D002040 ORTHO05D002502 2.6e-08 63.9 51 54.9
AL8G40280 Arabidopsis lyrata HOM05D002040 ORTHO05D002502 3.4e-08 63.5 51 54.9
BcaB07g33233 Brassica carinata HOM05D000496 ORTHO05D000411 3.4e-08 63.5 93 45.2
Cfa018905 Carpinus fangiana HOM05D002040 ORTHO05D002502 3.4e-08 63.5 46 58.7
MBI08_g31847_MAGBIO Magnolia biondii HOM05D002040 ORTHO05D002502 3.4e-08 63.5 46 60.9
Oeu023469.1 Olea europaea HOM05D002040 ORTHO05D002502 3.4e-08 63.5 55 58.2
GSVIVG01007575001 Vitis vinifera HOM05D002040 ORTHO05D002502 3.4e-08 63.5 46 60.9
A09p42890 Brassica napus HOM05D008340 ORTHO05D000411 4.5e-08 63.2 77 53.2
Carub.0005s1455 Capsella rubella HOM05D002040 ORTHO05D002502 4.5e-08 63.2 47 57.4
SHI17333 Sapria himalayana HOM05D002040 ORTHO05D002502 4.5e-08 63.2 51 54.9
TAR622G0169 Trochodendron aralioides HOM05D002040 ORTHO05D002502 4.5e-08 63.2 54 53.7
Aa31LG1G18780 Aethionema arabicum HOM05D002040 ORTHO05D002502 5.9e-08 62.8 47 59.6
BcaB01g01758 Brassica carinata HOM05D000496 ORTHO05D000411 5.9e-08 62.8 83 50.6
BcaC01g02565 Brassica carinata HOM05D002040 ORTHO05D002502 5.9e-08 62.8 51 54.9
BcaC09g51821 Brassica carinata HOM05D000496 ORTHO05D000411 5.9e-08 62.8 83 49.4
BolC3t18596H Brassica oleracea HOM05D002040 ORTHO05D002502 5.9e-08 62.8 51 54.9
BraA01t02423Z Brassica rapa HOM05D008340 ORTHO05D014933 5.9e-08 62.8 81 53.1
FAN13G1060 Fragaria x ananassa HOM05D002040 ORTHO05D002502 5.9e-08 62.8 51 56.9
BcaC03g15008 Brassica carinata HOM05D000496 ORTHO05D000411 7.7e-08 62.4 168 33.9
Cpa.g.sc4.43 Carica papaya HOM05D002040 ORTHO05D002502 7.7e-08 62.4 43 65.1
PSO782G1163 Papaver somniferum HOM05D002040 ORTHO05D002502 7.7e-08 62.4 54 53.7
FAN08G0079 Fragaria x ananassa HOM05D002040 ORTHO05D002502 1.0e-07 62.0 51 54.9
PSO063G6142 Papaver somniferum HOM05D002040 ORTHO05D002502 1.0e-07 62.0 54 53.7
RcHm_v2.0_Chr7g0191661 Rosa chinensis HOM05D002040 ORTHO05D002502 1.0e-07 62.0 51 52.9
FvH4_5g07020 Fragaria vesca HOM05D002040 ORTHO05D002502 1.3e-07 61.6 51 54.9
FAN04G2248 Fragaria x ananassa HOM05D002040 ORTHO05D002502 1.3e-07 61.6 51 54.9
FAN18G4283 Fragaria x ananassa HOM05D002040 ORTHO05D002502 1.3e-07 61.6 51 54.9
BcaNung03207 Brassica carinata HOM05D000496 ORTHO05D000411 1.7e-07 61.2 84 53.6
BolC2t08618H Brassica oleracea HOM05D008340 ORTHO05D039876 1.7e-07 61.2 161 34.2
CDE06G2849 Ceratophyllum demersum HOM05D002040 ORTHO05D002502 1.7e-07 61.2 46 58.7
Hund18530 Selenicereus undatus HOM05D002040 ORTHO05D002502 1.7e-07 61.2 46 58.7
C01p42910 Brassica napus HOM05D008340 ORTHO05D014933 5.0e-07 59.7 81 50.6
Os08g0120500 Oryza sativa ssp. japonica HOM05D002040 ORTHO05D002502 5.0e-07 59.7 46 50.0
BcaC01g02493 Brassica carinata HOM05D000496 ORTHO05D000411 6.5e-07 59.3 77 49.4
BolC1t03052H Brassica oleracea HOM05D008340 ORTHO05D000411 8.5e-07 58.9 164 32.9
DCAR_016427 Daucus carota HOM05D002040 ORTHO05D002502 8.5e-07 58.9 43 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2812 Anthoceros agrestis HOM05D002040 ORTHO05D002502 1.9e-06 57.8 113 32.7
AT3G48390 Arabidopsis thaliana HOM05D002040 ORTHO05D002502 1.9e-06 57.8 42 61.9
Zm00001eb079330 Zea mays HOM05D002040 ORTHO05D002502 1.9e-06 57.8 43 60.5
MSTRG.11517 Avicennia marina HOM05D002040 ORTHO05D002502 3.2e-06 57.0 54 51.9
BcaB08g35496 Brassica carinata HOM05D000496 ORTHO05D000411 3.2e-06 57.0 83 47.0
SEGI_22873 Sequoiadendron giganteum HOM05D002040 ORTHO05D002502 4.2e-06 56.6 47 55.3
Solyc03g111640.4 Solanum lycopersicum HOM05D002040 ORTHO05D002502 4.2e-06 56.6 47 57.4
BcaB07g32720 Brassica carinata HOM05D000496 ORTHO05D000411 5.5e-06 56.2 84 47.6
BcaC01g02339 Brassica carinata HOM05D002040 ORTHO05D002502 5.5e-06 56.2 58 51.7
BolC3t18916H Brassica oleracea HOM05D002040 ORTHO05D002502 5.5e-06 56.2 58 51.7
vmacro19722 Vaccinium macrocarpon HOM05D002040 ORTHO05D002502 5.5e-06 56.2 46 56.5
BcaB08g36780 Brassica carinata HOM05D000496 ORTHO05D000411 9.4e-06 55.5 84 47.6
C01p31180 Brassica napus HOM05D008340 ORTHO05D000411 9.4e-06 55.5 164 32.3


User provided reference genes

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