Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 3.1e-36 154.8 90 100.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 3.1e-36 154.8 90 100.0
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 3.0e-31 138.3 86 90.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 2.3e-28 128.6 87 86.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 4.0e-28 127.9 83 92.8
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 4.4e-27 124.4 87 88.5
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.4e-25 119.4 86 82.6
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.7e-23 112.5 88 78.4
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.7e-23 112.5 90 75.6
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.8e-20 102.4 82 78.0
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 7.6e-19 97.1 84 70.2
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.2e-18 95.5 73 74.0
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 6.4e-18 94.0 87 66.7
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 8.4e-18 93.6 84 70.2
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 8.4e-18 93.6 84 70.2
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.1e-17 93.2 84 69.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-17 93.2 84 69.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.1e-17 93.2 84 69.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.2e-16 89.7 73 69.9
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 2.7e-16 88.6 57 91.2
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.0e-15 86.7 90 57.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.9e-15 84.7 73 64.4
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.1e-15 84.3 73 64.4
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.5e-14 82.8 83 55.4
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.5e-14 82.8 83 57.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.5e-14 82.0 73 68.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.2e-13 79.7 83 57.8
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-13 79.0 73 61.6
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.1e-13 79.0 66 66.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.1e-13 79.0 77 68.8
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 4.7e-13 77.8 78 57.7
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 6.2e-13 77.4 85 56.5
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.1e-12 76.6 78 57.7
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.4e-12 76.3 65 67.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.8e-12 75.9 88 54.5
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.4e-12 75.5 78 60.3
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 5.3e-12 74.3 66 63.6
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.3e-12 74.3 86 55.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 6.9e-12 73.9 76 60.5
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 6.9e-12 73.9 75 60.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 6.9e-12 73.9 72 59.7
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.2e-11 73.2 78 59.0
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.5e-11 72.8 83 55.4
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.0e-11 72.4 86 53.5
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.6e-11 72.0 76 56.6
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.6e-11 72.0 84 58.3
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.4e-11 71.6 89 53.9
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.4e-11 71.6 89 55.1
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.4e-11 71.6 72 59.7
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.4e-11 71.6 76 57.9
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.4e-11 71.2 72 59.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 5.8e-11 70.9 78 55.1
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.8e-11 70.9 71 62.0
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.8e-11 70.9 71 62.0
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 5.8e-11 70.9 90 53.3
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.8e-11 70.9 84 53.6
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.8e-11 70.9 70 57.1
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.6e-11 70.5 79 58.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.6e-11 70.5 84 53.6
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 9.9e-11 70.1 83 55.4
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 9.9e-11 70.1 72 58.3
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 9.9e-11 70.1 75 57.3
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-10 69.7 71 60.6
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.3e-10 69.7 75 56.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.7e-10 69.3 73 56.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.7e-10 69.3 77 54.5
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.2e-10 68.9 78 57.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 2.2e-10 68.9 90 53.3
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.8e-10 68.2 71 59.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 4.9e-10 67.8 75 52.0
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 4.9e-10 67.8 70 54.3
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 6.4e-10 67.4 73 57.5
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 6.4e-10 67.4 72 58.3
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 8.4e-10 67.0 81 49.4
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 8.4e-10 67.0 81 49.4
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-09 66.6 82 53.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.4e-09 66.2 79 54.4
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 82 52.4
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.9e-09 65.9 84 51.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.9e-09 65.9 71 57.7
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.9e-09 65.9 84 56.0
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.9e-09 65.9 78 53.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.4e-09 65.5 85 48.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.4e-09 65.5 73 53.4
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.4e-09 65.5 72 55.6
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 3.2e-09 65.1 81 50.6
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 3.2e-09 65.1 73 53.4
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 4.2e-09 64.7 74 52.7
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.2e-09 64.7 72 56.9
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.1e-09 63.9 72 54.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.6e-08 62.8 68 52.9
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.6e-08 62.8 72 54.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-08 62.8 56 64.3
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.1e-08 62.4 73 58.9
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.1e-08 62.4 73 50.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.1e-08 62.4 72 54.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.1e-08 62.4 73 53.4
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.7e-08 62.0 80 56.2
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 3.5e-08 61.6 63 55.6
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.5e-08 61.6 73 53.4
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 4.6e-08 61.2 64 59.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.0e-08 60.8 86 48.8
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 6.0e-08 60.8 64 56.2
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.8e-08 60.5 80 55.0
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.0e-07 60.1 72 48.6
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.0e-07 60.1 93 47.3
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.0e-07 60.1 82 50.0
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.0e-07 60.1 82 47.6
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.0e-07 60.1 87 46.0
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.0e-07 58.5 81 50.6
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.0e-07 58.5 80 52.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.0e-07 58.5 80 52.5
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.9e-07 58.2 69 58.0
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.9e-07 58.2 76 51.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.1e-07 57.8 76 50.0
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 5.1e-07 57.8 63 52.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 6.6e-07 57.4 85 50.6
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 6.6e-07 57.4 58 56.9
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 8.7e-07 57.0 73 52.1
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-06 56.6 77 50.6
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.1e-06 56.6 80 50.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.5e-06 56.2 76 50.0
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-06 55.8 80 55.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 2.5e-06 55.5 53 62.3
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.5e-06 55.5 65 49.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.5e-06 55.5 78 51.3
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.5e-06 55.5 66 56.1
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 3.3e-06 55.1 78 47.4
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.3e-06 54.7 65 56.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.3e-06 54.7 80 53.8
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 5.6e-06 54.3 63 50.8
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 5.6e-06 54.3 63 50.8
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 5.6e-06 54.3 85 47.1
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.6e-06 53.5 71 50.7
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 9.6e-06 53.5 78 46.2
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 9.6e-06 53.5 85 47.1


User provided reference genes

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