Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 9.7e-174 613.6 340 100.0
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 3.7e-173 611.7 340 99.7
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 2.4e-156 555.8 347 85.9
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 2.4e-156 555.8 347 85.9
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 2.4e-156 555.8 347 85.9
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.0e-138 495.7 349 76.8
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 6.8e-127 458.0 348 72.7
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.9e-125 452.6 345 71.9
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.4e-116 422.9 349 70.2
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.0e-106 391.0 351 67.5
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 3.9e-106 389.0 340 69.7
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.1e-99 366.7 344 58.4
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.1e-91 340.1 349 60.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 7.9e-83 311.6 318 55.3
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 6.9e-79 298.5 350 48.0
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 2.0e-78 297.0 340 49.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 1.4e-76 290.8 322 50.6
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 2.0e-73 280.4 327 48.0
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.3e-72 277.7 340 46.8
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 1.8e-71 273.9 339 45.1
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.4e-71 273.5 326 46.9
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 9.1e-71 271.6 339 46.0
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.2e-70 271.2 339 46.0
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 4.5e-70 269.2 326 43.6
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 3.8e-69 266.2 336 47.3
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 8.5e-69 265.0 320 46.9
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.1e-68 264.6 321 44.5
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 7.2e-68 261.9 332 46.4
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 2.1e-67 260.4 323 45.8
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 1.8e-66 257.3 316 44.9
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 6.7e-66 255.4 322 45.3
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 8.8e-66 255.0 326 45.4
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 2.0e-65 253.8 345 45.5
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 2.6e-65 253.4 342 45.9
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 3.3e-65 253.1 324 43.8
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 3.3e-65 253.1 324 44.4
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.4e-65 252.7 348 45.1
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 5.7e-65 252.3 321 45.8
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 7.5e-65 251.9 343 45.2
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 9.7e-65 251.5 324 45.1
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 9.7e-65 251.5 321 46.4
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 4.8e-64 249.2 340 45.0
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 6.3e-64 248.8 345 44.3
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 6.3e-64 248.8 336 46.4
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 8.2e-64 248.4 348 44.3
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.8e-63 247.3 339 43.7
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.8e-63 247.3 339 43.7
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.8e-63 247.3 339 43.7
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.8e-63 247.3 339 43.7
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 2.4e-63 246.9 338 44.7
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 9.1e-63 245.0 323 44.3
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.2e-62 244.6 319 43.9
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 2.0e-62 243.8 343 46.1
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 2.7e-62 243.4 322 43.8
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.5e-62 243.0 330 41.2
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 4.5e-62 242.7 323 44.3
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 7.7e-62 241.9 325 43.7
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.3e-61 241.1 333 40.8
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.7e-61 240.7 322 42.9
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 2.2e-61 240.4 348 44.8
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.9e-61 240.0 322 44.1
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 5.0e-61 239.2 306 47.1
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 8.5e-61 238.4 331 43.2
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 1.5e-60 237.7 337 43.3
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.5e-60 237.7 332 45.2
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 4.2e-60 236.1 337 43.3
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 7.2e-60 235.3 339 41.0
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 9.4e-60 235.0 327 40.1
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 2.1e-59 233.8 333 40.2
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 3.6e-59 233.0 316 40.5
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 4.7e-59 232.6 325 42.5
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 6.1e-59 232.3 347 39.2
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.4e-58 231.1 332 40.4
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 8.8e-58 228.4 322 41.0
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.2e-57 228.0 299 45.5
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.5e-57 227.6 323 41.5
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 2.0e-57 227.3 336 41.7
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 3.4e-57 226.5 291 46.7
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 5.7e-57 225.7 330 43.6
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.2e-56 223.8 310 40.6
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 4.8e-56 222.6 318 40.9
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.4e-55 221.1 344 39.0
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.4e-55 220.3 336 38.7
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 9.1e-55 218.4 336 40.5
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 9.1e-55 218.4 338 39.3
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 2.9e-53 213.4 293 42.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.1e-52 211.5 325 40.9
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.5e-52 211.1 319 40.1
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 1.2e-51 208.0 337 37.7
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 8.8e-50 201.8 301 40.9
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 2.6e-49 200.3 178 61.2
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 3.4e-49 199.9 188 58.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.7e-49 199.1 307 39.1
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 9.8e-49 198.4 302 39.4
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.2e-46 191.4 158 61.4
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.5e-46 189.5 242 46.3
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.3e-45 187.2 324 37.0
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.9e-44 184.1 328 39.9
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.8e-43 180.3 302 40.1
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 4.4e-41 172.9 199 49.2
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 6.4e-40 169.1 198 43.4
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.4e-39 167.9 271 37.6
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 5.0e-37 159.5 320 35.3
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-36 158.3 114 69.3
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-36 158.3 114 69.3
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 3.3e-36 156.8 326 35.6
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 7.3e-36 155.6 101 76.2
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.2e-35 154.8 244 39.3
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.8e-34 151.0 332 31.3
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 4.0e-34 149.8 337 35.0
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.8e-33 146.0 238 38.7
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 8.3e-32 142.1 103 67.0
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.1e-31 141.7 123 55.3
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 7.0e-31 139.0 137 58.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 3.9e-29 133.3 125 56.8
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 6.6e-29 132.5 121 57.9
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 6.6e-29 132.5 121 57.9
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.1e-28 131.7 317 29.7
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.1e-28 131.7 315 29.2
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 1.9e-28 131.0 95 67.4
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 5.6e-28 129.4 121 57.9
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 5.6e-28 129.4 121 57.9
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.2e-27 128.3 121 57.9
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.1e-27 127.5 158 46.8
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-26 125.2 121 57.9
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 5.2e-26 122.9 141 44.7
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 3.4e-25 120.2 101 59.4
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 9.8e-25 118.6 305 34.4
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.3e-24 118.2 190 38.9
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 1.2e-22 111.7 344 30.5
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 2.7e-22 110.5 282 29.4
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 2.5e-20 104.0 114 52.6
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 3.1e-18 97.1 83 61.4
C09p41690 Brassica napus HOM05D005574 ORTHO05D022054 2.6e-09 67.4 64 51.6
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 8.4e-08 62.4 83 42.2
THA.LOC104826166 Tarenaya hassleriana HOM05D000003 ORTHO05D000283 4.6e-06 56.6 54 55.6


User provided reference genes

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