Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-44 182.2 89 100.0
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.2e-22 107.8 88 69.3
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 4.2e-22 107.8 88 69.3
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 4.2e-22 107.8 88 69.3
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 4.2e-22 107.8 88 69.3
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 4.2e-22 107.8 88 69.3
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 4.2e-22 107.8 88 69.3
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 6.1e-21 104.0 88 65.9
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 8.8e-20 100.1 81 72.8
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 8.8e-20 100.1 81 72.8
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 8.8e-20 100.1 81 72.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 5.7e-19 97.4 88 61.4
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 5.7e-19 97.4 88 61.4
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 5.7e-19 97.4 88 61.4
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 9.8e-19 96.7 88 61.4
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.3e-18 96.3 88 61.4
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.3e-18 96.3 88 59.1
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.7e-18 95.9 88 62.5
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.2e-18 95.5 88 60.2
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 3.7e-18 94.7 88 60.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 4.8e-18 94.4 88 60.2
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 6.3e-18 94.0 90 61.1
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-17 93.2 81 69.1
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-17 93.2 81 69.1
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-17 92.4 88 59.1
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 4.1e-17 91.3 81 67.9
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 5.4e-17 90.9 87 55.2
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.2e-16 89.7 86 57.0
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 4.5e-16 87.8 86 57.0
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 4.5e-16 87.8 86 58.1
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 4.5e-16 87.8 87 55.2
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 4.5e-16 87.8 86 57.0
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 4.5e-16 87.8 86 58.1
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 7.7e-16 87.0 86 60.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.0e-15 86.7 86 57.0
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.0e-15 86.7 86 57.0
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.3e-15 86.3 86 58.1
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.7e-15 85.9 84 57.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.7e-15 85.9 84 57.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 2.3e-15 85.5 86 57.0
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.9e-15 85.1 86 55.8
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.9e-15 85.1 84 58.3
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.8e-15 84.7 88 53.4
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 3.8e-15 84.7 84 56.0
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 5.0e-15 84.3 82 57.3
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.6e-15 84.0 88 54.5
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.6e-15 84.0 88 54.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 6.6e-15 84.0 86 55.8
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 6.6e-15 84.0 86 57.0
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 8.6e-15 83.6 88 53.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.1e-14 83.2 82 54.9
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 1.5e-14 82.8 84 56.0
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-14 82.8 84 56.0
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-14 82.8 84 56.0
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.5e-14 82.8 87 51.7
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.5e-14 82.8 82 53.7
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.5e-14 82.8 82 56.1
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 3.3e-14 81.6 86 53.5
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 3.3e-14 81.6 82 53.7
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 4.2e-14 81.3 86 53.5
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 7.2e-14 80.5 86 53.5
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 7.2e-14 80.5 86 53.5
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 7.2e-14 80.5 82 54.9
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 9.5e-14 80.1 86 52.3
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.2e-13 79.7 86 51.2
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.2e-13 79.7 83 50.6
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.2e-13 79.7 81 53.1
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.2e-13 79.7 83 53.0
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.2e-13 79.7 87 50.6
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.2e-13 79.7 82 52.4
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.6e-13 79.3 81 55.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.6e-13 79.3 86 53.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.6e-13 79.3 83 53.0
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.1e-13 79.0 83 53.0
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 2.1e-13 79.0 83 53.0
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 3.6e-13 78.2 82 53.7
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.7e-13 77.8 82 54.9
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 6.1e-13 77.4 82 53.7
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 6.1e-13 77.4 84 48.8
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 6.1e-13 77.4 82 53.7
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.4e-12 76.3 82 51.2
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.8e-12 75.9 83 51.8
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.8e-12 75.9 83 51.8
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.3e-12 75.5 83 51.8
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 2.3e-12 75.5 82 53.7
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 2.3e-12 75.5 82 53.7
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.0e-12 75.1 84 51.2
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.0e-12 75.1 86 51.2
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 3.0e-12 75.1 82 52.4
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 4.0e-12 74.7 37 91.9
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 4.0e-12 74.7 83 51.8
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 4.0e-12 74.7 83 50.6
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.2e-12 74.3 83 51.8
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.2e-12 74.3 86 51.2
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 6.8e-12 73.9 83 51.8
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 6.8e-12 73.9 86 51.2
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.8e-12 73.9 83 51.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 8.9e-12 73.6 83 51.8
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 8.9e-12 73.6 82 52.4
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.9e-12 73.6 83 51.8
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.2e-11 73.2 86 47.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.2e-11 73.2 88 50.0
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.2e-11 73.2 86 48.8
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.5e-11 72.8 82 50.0
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.5e-11 72.8 82 52.4
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.5e-11 72.8 82 50.0
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.5e-11 72.8 82 52.4
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.0e-11 72.4 86 50.0
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.4e-11 71.2 82 47.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.4e-11 71.2 80 51.2
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.4e-11 71.2 80 50.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 5.7e-11 70.9 83 49.4
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.7e-10 69.3 82 46.3
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 6.3e-10 67.4 82 48.8
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 8.3e-10 67.0 79 46.8
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 1.6e-08 62.8 109 41.3
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 3.5e-08 61.6 84 44.0
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 5.9e-08 60.8 82 43.9
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 7.8e-08 60.5 87 42.5
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 7.8e-08 60.5 82 45.1
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.0e-07 57.8 69 47.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 3.3e-06 55.1 50 52.0
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.3e-06 55.1 47 55.3
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 4.3e-06 54.7 82 40.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 5.6e-06 54.3 82 40.2


User provided reference genes

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