Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 0.0e+00 1124.8 686 100.0
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 5.1e-301 1037.3 697 93.7
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 6.5e-288 993.8 687 86.6
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.4e-285 986.1 687 90.4
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 4.4e-284 981.1 687 90.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.5e-231 806.6 710 78.6
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.4e-205 719.5 711 70.5
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 6.9e-205 718.0 708 66.1
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.5e-204 716.8 714 63.9
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.6e-204 716.1 695 70.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.0e-203 714.1 696 68.7
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 8.4e-203 711.1 696 68.5
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 8.5e-195 684.5 882 59.1
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.8e-192 676.8 732 67.5
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 5.3e-181 638.6 967 53.6
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.4e-160 570.9 557 59.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.3e-158 564.3 704 61.4
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.0e-152 542.7 620 62.3
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 5.2e-128 462.6 749 49.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 9.9e-127 458.4 355 70.7
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.1e-80 303.9 241 68.9
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 7.5e-50 203.0 717 29.4
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.7e-49 201.8 716 27.7
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.7e-49 200.7 749 29.5
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 6.3e-49 199.9 760 29.2
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 5.3e-48 196.8 719 27.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.0e-47 194.9 709 29.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 7.7e-47 193.0 713 28.6
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 3.8e-46 190.7 704 28.7
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 3.2e-45 187.6 757 28.0
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 7.2e-45 186.4 713 37.2
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 9.4e-45 186.0 707 29.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.2e-44 185.7 748 28.2
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.6e-44 185.3 697 28.6
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.8e-43 181.8 711 37.8
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 4.0e-43 180.6 858 25.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.5e-42 178.7 766 29.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.0e-42 178.3 728 27.9
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 2.6e-42 177.9 757 28.1
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.4e-42 177.6 703 28.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 3.4e-42 177.6 719 29.5
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 7.5e-42 176.4 711 35.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 9.8e-42 176.0 757 27.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.3e-41 175.6 705 27.4
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.7e-41 175.3 716 26.8
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.2e-41 174.9 747 26.2
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.7e-41 174.1 713 35.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.7e-41 174.1 706 36.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 6.3e-41 173.3 737 29.6
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.1e-40 172.6 698 27.2
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.8e-40 171.8 517 29.0
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.1e-40 171.0 711 34.5
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 5.4e-40 170.2 747 27.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 7.7e-39 166.4 587 29.1
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.6e-36 158.7 612 27.3
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.6e-36 158.7 765 25.4
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.1e-36 158.3 700 25.7
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.0e-35 156.0 604 29.3
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.0e-35 154.5 787 25.2
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 5.2e-35 153.7 484 28.7
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 5.2e-35 153.7 745 26.2
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 6.8e-35 153.3 826 26.9
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 6.8e-35 153.3 591 28.6
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 8.9e-35 152.9 244 38.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.5e-34 152.1 728 26.8
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 2.0e-34 151.8 244 37.7
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 3.4e-34 151.0 865 26.5
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 3.4e-34 151.0 708 26.7
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 5.7e-34 150.2 699 26.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.3e-33 149.1 600 26.2
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.3e-33 149.1 723 24.6
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.7e-33 148.7 702 26.2
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.7e-33 148.7 217 41.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.2e-33 148.3 687 26.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.8e-33 147.9 690 24.1
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 6.3e-33 146.7 519 26.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 8.3e-33 146.4 703 24.9
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 9.2e-32 142.9 721 25.9
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.0e-31 141.7 702 28.6
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.3e-30 138.3 773 24.3
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 8.6e-30 136.3 816 26.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 2.8e-28 131.3 753 23.4
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 6.1e-28 130.2 247 37.2
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 8.0e-28 129.8 714 24.5
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 8.0e-28 129.8 701 25.4
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.4e-27 129.0 515 30.1
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.8e-27 128.6 701 25.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 3.1e-27 127.9 701 24.8
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-26 125.9 231 38.5
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.8e-26 122.9 525 27.4
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-25 122.5 177 37.9
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.3e-25 122.5 559 26.7
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.7e-25 122.1 751 24.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 4.9e-25 120.6 220 35.9
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.2e-24 117.9 230 35.2
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 7.0e-24 116.7 712 24.4
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 2.0e-23 115.2 726 25.6
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.1e-21 109.4 111 50.5
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.9e-21 108.6 148 40.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.5e-21 108.2 730 22.6
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 3.3e-21 107.8 698 24.4
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 4.3e-21 107.5 184 37.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.5e-21 106.3 475 26.7
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.2e-20 105.9 185 37.3
BcaC07g36863 Brassica carinata HOM05D005385 ORTHO05D006768 4.0e-19 100.9 76 72.4
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 6.8e-19 100.1 516 38.6
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.5e-18 99.0 356 30.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.2e-17 95.1 249 32.1
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.2e-17 95.1 161 42.2
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.2e-17 95.1 238 31.1
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.4e-16 91.7 248 32.3
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 6.0e-15 87.0 686 23.2
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.0e-14 86.3 246 31.3
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.9e-14 84.3 195 35.4
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 8.6e-14 83.2 226 31.4
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.9e-13 82.0 205 30.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 9.5e-13 79.7 238 29.0
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.3e-11 75.1 156 36.5
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 6.8e-11 73.6 308 28.9
BcaB04g19303 Brassica carinata HOM05D005385 ORTHO05D006768 1.5e-10 72.4 53 67.9
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-10 72.4 221 34.8
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-10 72.4 221 34.8
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 2.2e-09 68.6 168 34.5
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 3.7e-09 67.8 105 39.0
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 6.4e-09 67.0 45 73.3
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-06 59.3 104 42.3
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-06 59.3 234 27.4
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.3e-06 59.3 98 36.7
C02p46800 Brassica napus HOM05D005385 ORTHO05D039913 3.0e-06 58.2 40 72.5
SEGI_06248 Sequoiadendron giganteum HOM05D005385 ORTHO05D004652 3.9e-06 57.8 127 29.9
BcaB05g22977 Brassica carinata HOM05D005385 ORTHO05D006768 8.6e-06 56.6 100 42.0


User provided reference genes

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