Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1856.3 977 100.0
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 0.0e+00 1560.4 992 84.2
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 0.0e+00 1534.6 999 81.6
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 0.0e+00 1531.2 997 81.7
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1530.0 999 81.4
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 0.0e+00 1507.7 1001 80.2
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1504.2 987 81.0
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 0.0e+00 1494.9 999 79.4
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 0.0e+00 1480.3 1016 78.9
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 0.0e+00 1465.3 993 78.2
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 0.0e+00 1444.1 996 77.6
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 0.0e+00 1355.9 896 82.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 0.0e+00 1227.2 1011 66.4
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 0.0e+00 1114.0 1003 61.8
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 0.0e+00 1096.3 999 64.1
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.1e-245 854.0 993 48.1
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 8.2e-244 847.8 1002 47.7
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 7.2e-240 834.7 985 47.1
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 1.8e-238 830.1 996 46.1
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.2e-236 823.2 1042 45.5
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 3.5e-234 815.8 995 46.3
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 2.9e-233 812.8 965 47.3
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 3.2e-232 809.3 996 46.9
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 2.1e-231 806.6 1007 45.0
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 6.1e-231 805.1 998 46.3
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 1.8e-230 803.5 998 46.3
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 4.0e-230 802.4 1007 45.9
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 1.1e-227 794.3 999 45.2
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 2.7e-226 789.6 1007 45.0
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 1.6e-223 780.4 1013 44.6
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.1e-223 780.0 962 46.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 8.0e-223 778.1 996 45.0
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.8e-222 776.9 1007 45.1
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 5.2e-222 775.4 938 46.4
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.5e-221 773.9 1045 43.3
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 2.6e-221 773.1 856 51.1
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 2.8e-220 769.6 961 46.0
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.1e-219 765.8 1007 42.8
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 7.0e-219 765.0 1004 44.3
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 1.2e-218 764.2 992 43.2
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 2.7e-218 763.1 1004 43.5
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.3e-217 760.8 1010 43.6
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 7.3e-216 755.0 1016 42.6
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 5.2e-214 748.8 1005 42.7
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 3.7e-212 742.7 1012 43.3
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 4.1e-211 739.2 1000 42.8
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.2e-210 737.6 995 42.4
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.5e-208 730.7 966 43.4
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 1.5e-208 730.7 997 41.3
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 5.6e-208 728.8 984 42.3
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 7.3e-208 728.4 1016 42.1
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 2.8e-207 726.5 966 42.7
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 2.3e-206 723.4 990 42.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 1.2e-205 721.1 1004 41.3
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 3.7e-204 716.1 1004 40.3
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 2.0e-202 710.3 1002 42.6
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 6.0e-202 708.8 898 45.3
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 1.7e-201 707.2 1010 42.7
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 3.0e-201 706.4 1001 42.3
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.1e-199 700.3 985 41.8
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 8.1e-199 698.4 979 40.1
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.1e-198 698.0 883 45.8
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.1e-198 698.0 1039 40.7
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.5e-197 694.1 981 41.7
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.5e-197 694.1 983 41.2
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.2e-194 684.5 994 40.0
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 2.1e-194 683.7 998 41.7
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 1.1e-192 677.9 987 41.4
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 4.7e-191 672.5 1023 40.7
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.3e-188 664.5 1021 40.7
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.3e-188 664.5 1031 39.5
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.4e-187 660.2 1058 39.1
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 2.3e-185 653.7 903 42.3
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 3.9e-185 652.9 899 42.9
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 6.6e-185 652.1 1003 40.0
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 6.6e-185 652.1 967 41.3
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 3.3e-184 649.8 1011 38.9
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 6.9e-182 642.1 949 39.6
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 4.9e-180 636.0 834 43.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 2.4e-179 633.6 901 41.3
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 6.6e-177 625.5 1015 38.1
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 2.8e-175 620.2 925 40.9
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.1e-174 618.2 1004 39.1
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 2.6e-173 613.6 1006 38.3
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 7.6e-173 612.1 884 41.2
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 7.1e-171 605.5 771 43.1
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 2.3e-169 600.5 936 38.9
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 3.6e-167 593.2 1045 37.3
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 3.6e-167 593.2 1043 37.7
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 7.6e-165 585.5 907 39.4
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.1e-158 565.1 992 36.4
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 7.4e-152 542.3 1009 34.2
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.3e-151 541.6 702 43.3
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 2.9e-148 530.4 657 45.1
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 3.0e-145 520.4 824 37.5
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 1.3e-143 515.0 778 40.0
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.4e-139 501.5 872 37.4
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 4.6e-138 496.5 670 42.5
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.7e-135 488.0 1033 33.9
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 8.8e-121 439.1 826 36.0
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.2e-120 438.7 928 33.2
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 3.0e-60 238.0 136 91.9
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.4e-54 218.4 1027 23.7
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-49 202.2 119 86.6
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.5e-48 199.1 554 28.5
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.9e-46 192.2 319 39.5
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 3.3e-43 181.4 270 40.0
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 3.1e-41 174.9 179 50.3
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 3.2e-38 164.9 751 24.2
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 1.9e-27 129.0 88 78.4
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.4e-25 122.9 145 49.0
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.5e-24 119.4 435 28.5
A08p36810 Brassica napus HOM05D000256 ORTHO05D000119 2.5e-14 85.5 57 78.9
BraA08t35582Z Brassica rapa HOM05D000256 ORTHO05D000119 2.5e-14 85.5 57 78.9
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 6.1e-13 80.9 410 23.2
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.0e-07 63.5 540 20.4
BcaB02g07770 Brassica carinata HOM05D004445 ORTHO05D005578 1.3e-07 63.2 46 73.9


User provided reference genes

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