Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-52 209.5 101 100.0
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-52 209.5 101 100.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 5.8e-52 207.2 101 99.0
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.7e-51 205.7 101 98.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 3.7e-46 188.0 101 90.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.2e-46 187.2 101 89.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 6.2e-46 187.2 101 91.1
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.2e-46 187.2 101 89.1
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.8e-45 185.7 101 87.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.4e-44 181.4 101 86.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.1e-41 172.2 101 84.2
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-37 159.1 101 79.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-37 159.1 101 79.2
Aa31LG1G20540 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.7e-16 87.4 95 53.7
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.4e-13 79.7 90 51.1
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.4e-13 79.7 99 51.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.8e-13 79.3 93 49.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.4e-13 79.0 87 52.9
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 2.0e-12 75.9 103 50.5
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.5e-12 74.7 82 50.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 4.5e-12 74.7 95 48.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 5.9e-12 74.3 83 53.0
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.9e-12 74.3 88 51.1
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.3e-11 73.2 96 46.9
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.7e-11 72.8 85 48.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.7e-11 72.8 99 48.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.7e-11 72.8 105 44.8
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.2e-11 72.4 92 51.1
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.2e-11 72.4 86 50.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.9e-11 72.0 102 45.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.8e-11 71.6 83 53.0
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.8e-11 71.6 87 50.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.8e-11 71.6 105 45.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.5e-11 70.9 86 46.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 6.5e-11 70.9 86 50.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.5e-11 70.9 106 45.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.5e-11 70.9 86 48.8
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.5e-11 70.5 89 50.6
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.5e-11 70.5 110 44.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 8.5e-11 70.5 74 54.1
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.1e-10 70.1 105 44.8
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.1e-10 70.1 87 46.0
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.1e-10 70.1 98 49.0
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.5e-10 69.7 95 46.3
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.9e-10 69.3 86 52.3
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.9e-10 69.3 103 46.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.9e-10 69.3 101 47.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.9e-10 69.3 93 44.1
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.5e-10 68.9 98 42.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 3.2e-10 68.6 78 53.8
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 4.2e-10 68.2 94 48.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 4.2e-10 68.2 92 50.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 4.2e-10 68.2 98 49.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.2e-10 68.2 102 45.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.5e-10 67.8 94 47.9
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.5e-10 67.8 93 49.5
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.5e-10 67.8 95 48.4
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 7.2e-10 67.4 92 50.0
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.2e-10 67.4 94 48.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.2e-10 67.4 102 42.2
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.2e-10 67.4 84 46.4
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 7.2e-10 67.4 105 42.9
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 9.4e-10 67.0 97 48.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 9.4e-10 67.0 97 48.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 9.4e-10 67.0 83 50.6
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 9.4e-10 67.0 89 46.1
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 9.4e-10 67.0 80 52.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 9.4e-10 67.0 90 44.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 9.4e-10 67.0 105 43.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.4e-10 67.0 100 44.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.2e-09 66.6 95 46.3
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.6e-09 66.2 89 46.1
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.6e-09 66.2 101 45.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.6e-09 66.2 103 40.8
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.6e-09 66.2 103 45.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.6e-09 66.2 104 43.3
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-09 65.9 92 42.4
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.1e-09 65.9 108 45.4
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.1e-09 65.9 102 47.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.1e-09 65.9 100 45.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.7e-09 65.5 99 42.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.7e-09 65.5 94 45.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.7e-09 65.5 95 43.2
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.6e-09 65.1 88 45.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 4.7e-09 64.7 94 44.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.7e-09 64.7 92 41.3
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 4.7e-09 64.7 91 49.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 4.7e-09 64.7 98 43.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.7e-09 64.7 96 45.8
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.7e-09 64.7 94 47.9
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.1e-09 64.3 97 40.2
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 6.1e-09 64.3 89 44.9
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.0e-09 63.9 78 44.9
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-08 63.5 103 43.7
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-08 63.5 104 46.2
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.0e-08 63.5 97 43.3
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 102 44.1
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.4e-08 63.2 83 49.4
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.4e-08 63.2 94 42.6
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.4e-08 63.2 94 42.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.8e-08 62.8 86 51.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.8e-08 62.8 82 48.8
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-08 62.4 104 45.2
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-08 62.4 102 46.1
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.3e-08 62.4 102 46.1
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.3e-08 62.4 98 40.8
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.3e-08 62.4 98 40.8
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.3e-08 62.4 88 43.2
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.0e-08 62.0 106 36.8
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.0e-08 61.6 85 48.2
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.0e-08 61.6 102 42.2
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.0e-08 61.6 95 43.2
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.2e-08 61.2 100 43.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 5.2e-08 61.2 89 44.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 6.7e-08 60.8 98 44.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.7e-08 60.8 122 36.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.7e-08 60.8 122 36.9
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.7e-08 60.8 94 41.5
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 8.8e-08 60.5 111 38.7
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 8.8e-08 60.5 100 39.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 8.8e-08 60.5 95 38.9
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 8.8e-08 60.5 91 48.4
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 8.8e-08 60.5 97 42.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-07 60.1 99 42.4
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.1e-07 60.1 94 44.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.1e-07 60.1 95 45.3
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.5e-07 59.7 97 44.3
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.5e-07 59.7 91 45.1
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 2.0e-07 59.3 85 41.2
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.0e-07 59.3 100 40.0
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.0e-07 59.3 99 41.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-07 59.3 101 43.6
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.6e-07 58.9 95 43.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.6e-07 58.9 81 49.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.3e-07 58.5 92 44.6
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.3e-07 58.5 92 46.7
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.3e-07 58.5 70 50.0
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 4.4e-07 58.2 83 48.2
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 5.7e-07 57.8 84 45.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.7e-07 57.8 85 45.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.5e-07 57.4 85 44.7
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 7.5e-07 57.4 75 49.3
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.5e-07 57.4 100 39.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 7.5e-07 57.4 82 45.1
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.5e-07 57.4 81 46.9
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 9.7e-07 57.0 83 45.8
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-06 56.6 85 42.4
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.3e-06 56.6 82 45.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.3e-06 56.6 98 42.9
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.7e-06 56.2 80 45.0
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.7e-06 56.2 87 42.5
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.7e-06 55.1 79 44.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.8e-06 54.7 93 40.9
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.3e-06 54.3 95 41.1
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 6.3e-06 54.3 95 42.1
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 6.3e-06 54.3 95 42.1
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 8.2e-06 53.9 94 41.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 8.2e-06 53.9 95 42.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 8.2e-06 53.9 95 42.1
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 8.2e-06 53.9 95 42.1
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 8.2e-06 53.9 95 42.1
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 8.2e-06 53.9 92 38.0


User provided reference genes

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