Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1411.7 670 100.0
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1379.0 671 98.1
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1332.8 670 95.5
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1325.5 670 94.8
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1288.5 670 90.9
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1288.5 670 90.9
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1287.7 670 91.0
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1286.2 670 92.7
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1279.2 670 90.1
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1279.2 670 90.1
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1265.0 643 92.4
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1259.6 670 89.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1253.0 670 89.3
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1251.5 670 89.3
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1251.1 670 89.1
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 0.0e+00 1217.6 671 86.4
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1159.4 691 79.2
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 0.0e+00 1096.3 577 90.3
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1092.4 656 75.2
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1086.2 637 77.4
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 638 77.6
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1081.2 638 77.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1079.7 638 76.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1077.4 637 77.2
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 4.6e-312 1073.5 651 75.6
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 1.4e-311 1072.4 637 76.3
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.8e-311 1072.0 656 75.5
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 3.2e-311 1071.2 657 74.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 1.3e-309 1065.8 632 75.8
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 2.9e-309 1064.7 637 76.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 3.8e-309 1064.3 656 74.2
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 1.9e-308 1062.0 637 76.3
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 3.2e-308 1061.2 633 76.6
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.2e-308 1060.1 638 75.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 2.7e-307 1058.1 638 75.1
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 2.7e-307 1058.1 640 74.2
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 6.1e-307 1057.0 656 74.2
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 8.0e-307 1056.6 637 74.6
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.0e-306 1056.2 637 75.5
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.8e-306 1055.4 644 75.0
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.8e-306 1055.4 641 75.8
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 2.3e-306 1055.0 656 75.0
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 4.0e-306 1054.3 633 75.8
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 5.2e-306 1053.9 637 75.4
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 8.8e-306 1053.1 632 75.0
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 8.8e-306 1053.1 633 76.3
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.2e-305 1052.7 656 74.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.5e-305 1052.4 633 76.1
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 2.0e-305 1052.0 633 75.8
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 9.8e-305 1049.7 633 75.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 4.8e-304 1047.3 635 75.1
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 6.3e-304 1047.0 636 74.2
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 8.3e-304 1046.6 636 75.0
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 3.5e-302 1041.2 642 74.0
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 3.5e-302 1041.2 630 74.9
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 3.5e-302 1041.2 633 75.4
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 5.9e-302 1040.4 630 74.9
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 7.7e-302 1040.0 659 72.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 3.8e-301 1037.7 637 73.9
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.9e-300 1035.4 640 74.1
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 2.1e-299 1031.9 640 73.6
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.1e-299 1031.9 602 78.2
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.8e-299 1031.6 582 80.4
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 2.8e-299 1031.6 640 74.2
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 4.7e-299 1030.8 640 73.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 8.0e-299 1030.0 586 79.0
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 2.0e-297 1025.4 586 78.7
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.0e-297 1025.4 638 73.2
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.6e-297 1025.0 637 73.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 9.8e-297 1023.1 642 72.9
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.2e-296 1021.9 637 72.7
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.5e-294 1014.2 636 73.6
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 5.9e-294 1013.8 777 62.5
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 4.0e-290 1001.1 633 72.4
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.9e-287 992.3 747 63.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.2e-286 989.6 634 71.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 2.7e-286 988.4 634 71.5
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 8.6e-285 983.4 716 65.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 4.7e-283 977.6 630 71.9
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 4.7e-283 977.6 849 56.8
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 8.9e-282 973.4 633 72.2
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.8e-275 951.8 675 66.4
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 3.1e-274 948.3 568 75.2
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-273 946.0 675 66.1
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 7.1e-271 937.2 637 69.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 7.8e-270 933.7 520 80.4
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 5.6e-268 927.5 585 72.8
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 5.2e-266 921.0 558 75.3
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.9e-264 915.2 521 79.5
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 5.6e-260 901.0 559 73.5
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.3e-260 900.6 538 77.1
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.8e-258 896.0 588 70.9
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.3e-256 889.8 547 74.6
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 6.4e-256 887.5 526 75.7
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.6e-254 882.9 639 65.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.0e-249 865.9 649 64.1
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.1e-247 860.1 588 69.7
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.2e-240 835.9 598 65.1
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.5e-236 822.4 634 60.1
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.6e-235 819.7 638 60.3
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.0e-233 812.8 588 65.8
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 6.5e-224 781.2 634 57.4
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.3e-220 768.8 631 57.1
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.2e-217 760.4 493 69.8
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.9e-207 726.5 430 77.4
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 6.1e-206 721.5 585 58.6
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.4e-194 682.9 412 75.2
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 8.6e-184 647.9 462 66.2
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.4e-172 609.0 354 77.7
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 9.2e-170 601.3 409 68.5
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 2.0e-169 600.1 424 67.2
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 2.7e-121 440.3 467 49.3
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 5.7e-119 432.6 273 72.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 4.5e-116 422.9 234 83.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.3e-83 315.1 229 66.8
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 6.3e-78 296.2 147 89.8
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.1e-73 279.6 215 60.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.4e-71 273.5 179 71.5
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 5.6e-58 229.9 130 77.7
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 6.4e-54 216.5 149 69.8
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.3e-51 208.0 340 36.5
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.1e-49 201.4 122 73.0
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.2e-48 196.8 161 54.0
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 5.1e-43 180.3 109 78.0
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 7.6e-39 166.4 84 86.9
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.2e-38 164.9 121 60.3
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.0e-35 156.0 115 71.3
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 2.1e-28 131.7 72 81.9
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 2.7e-28 131.3 212 35.4
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.7e-27 128.6 106 60.4
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.0e-24 117.5 106 56.6
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.0e-24 117.5 106 56.6
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.9e-24 116.7 94 67.0
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-23 115.5 110 51.8
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 2.2e-22 111.7 226 29.6
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 9.3e-21 106.3 402 23.1
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 2.1e-20 105.1 206 29.6
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 3.5e-20 104.4 83 61.4
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 7.9e-20 103.2 52 78.8
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.6e-18 96.3 78 56.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-17 95.9 55 72.7
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-17 95.9 55 72.7
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 6.2e-17 93.6 139 42.4
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.0e-16 90.9 55 69.1
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.2e-14 85.1 52 73.1
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.9e-13 82.0 50 70.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.9e-13 82.0 50 70.0
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.5e-12 77.8 41 75.6
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 4.6e-12 77.4 54 66.7
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 3.1e-08 64.7 264 25.4
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 4.0e-08 64.3 34 64.7
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 4.0e-08 64.3 258 25.2
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 9.0e-08 63.2 262 25.6
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 1.5e-07 62.4 227 26.9
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 1.5e-07 62.4 261 27.6
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 1.5e-07 62.4 261 25.3
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 2.6e-07 61.6 215 27.4
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.6e-07 61.6 260 26.2
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 3.4e-07 61.2 269 25.7
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 3.4e-07 61.2 260 26.2
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 3.4e-07 61.2 261 25.7
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 4.5e-07 60.8 260 26.2
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 1.7e-06 58.9 263 26.6
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 1.7e-06 58.9 263 26.6
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 1.7e-06 58.9 259 25.5
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.9e-06 58.2 219 26.0
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 3.8e-06 57.8 260 23.8
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 4.9e-06 57.4 254 26.0
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 6.5e-06 57.0 267 25.1


User provided reference genes

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