Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 8.6e-153 543.9 329 100.0
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 7.6e-117 424.5 287 92.0
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.9e-116 422.5 276 96.4
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 9.0e-110 401.0 276 91.7
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 8.4e-108 394.4 276 91.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 6.4e-92 341.7 287 72.1
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.3e-87 327.4 345 58.0
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-76 290.8 273 64.1
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 2.5e-72 276.6 273 62.3
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.8e-70 270.4 339 55.2
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.9e-69 265.4 338 47.6
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 6.5e-68 261.9 263 60.8
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 5.1e-65 252.3 342 51.5
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 6.7e-65 251.9 344 52.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.5e-61 240.7 339 46.3
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 1.2e-58 231.1 359 48.2
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.0e-48 197.2 359 40.7
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 4.5e-45 186.0 361 38.2
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.8e-38 164.1 321 38.3
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.1e-38 163.3 336 35.7
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.5e-35 154.5 308 37.0
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 5.5e-35 152.5 322 42.5
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 7.2e-35 152.1 315 37.8
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 9.5e-35 151.8 322 35.7
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.8e-34 150.2 87 90.8
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.6e-34 149.8 337 35.0
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.7e-34 149.4 331 35.6
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.4e-33 147.9 320 38.1
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.8e-33 147.5 335 36.7
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.2e-32 144.8 297 35.7
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.2e-32 144.8 307 40.7
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.2e-32 144.8 336 34.8
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.0e-32 144.1 314 35.0
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.6e-32 143.7 294 36.1
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 2.6e-32 143.7 308 36.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.4e-32 143.3 352 33.2
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 7.5e-32 142.1 302 36.1
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.3e-31 141.4 334 35.0
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.8e-31 140.2 334 35.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.8e-31 140.2 289 37.4
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 3.7e-31 139.8 298 36.2
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 3.7e-31 139.8 316 34.8
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 3.7e-31 139.8 340 43.5
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 8.3e-31 138.7 320 38.4
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.1e-30 138.3 356 37.6
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.1e-30 138.3 316 40.5
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.8e-30 137.5 310 35.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.1e-30 136.7 295 37.3
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.1e-30 136.7 290 42.4
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.1e-30 136.3 352 39.8
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 5.4e-30 136.0 323 35.0
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.4e-30 136.0 356 33.7
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 9.2e-30 135.2 338 33.7
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.2e-29 134.8 316 38.3
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.0e-29 134.0 342 33.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.0e-29 134.0 91 71.4
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.7e-29 133.7 338 45.3
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.7e-29 133.7 310 34.2
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 2.7e-29 133.7 308 35.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 5.9e-29 132.5 313 39.9
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 5.9e-29 132.5 322 33.2
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 5.9e-29 132.5 294 36.4
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.7e-28 131.0 321 44.5
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.7e-28 131.0 303 37.0
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.9e-28 130.2 300 32.3
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 6.6e-28 129.0 309 36.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.6e-28 129.0 356 36.8
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 6.6e-28 129.0 339 37.2
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.5e-27 127.9 91 70.3
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.5e-27 127.9 109 56.9
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.9e-27 127.5 91 69.2
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.3e-27 126.7 314 36.3
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 3.3e-27 126.7 357 31.9
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 4.3e-27 126.3 100 65.0
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 5.6e-27 125.9 368 40.2
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 5.6e-27 125.9 92 67.4
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 7.3e-27 125.6 236 42.8
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-26 124.8 354 36.4
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.6e-26 124.4 298 34.6
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.8e-26 123.6 69 92.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.8e-26 123.6 69 92.8
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.7e-26 122.9 331 40.2
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.7e-26 122.9 338 38.5
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 6.1e-26 122.5 110 60.0
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.1e-26 122.5 346 31.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.0e-26 122.1 105 61.9
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.0e-25 121.7 331 32.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.8e-25 120.9 91 64.8
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 8.9e-25 118.6 117 53.0
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 8.9e-25 118.6 90 64.4
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.5e-24 117.9 104 58.7
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.0e-24 117.5 106 55.7
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.6e-24 117.1 96 59.4
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 2.6e-24 117.1 287 31.7
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.4e-24 116.7 94 59.6
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 4.4e-24 116.3 114 53.5
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 2.2e-23 114.0 319 34.5
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 6.4e-23 112.5 106 53.8
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 8.3e-23 112.1 91 60.4
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 8.3e-23 112.1 91 60.4
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 4.1e-22 109.8 225 43.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 7.0e-22 109.0 92 58.7
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.6e-21 107.8 109 53.2
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 6.0e-21 105.9 77 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 7.8e-21 105.5 108 55.6
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.0e-20 105.1 300 34.3
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.3e-20 104.8 303 34.7
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.0e-20 103.6 300 35.3
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.1e-19 101.7 104 52.9
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 1.9e-19 100.9 219 39.7
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.9e-19 100.9 284 31.3
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.5e-19 100.5 325 30.8
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 3.3e-19 100.1 220 39.1
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 7.3e-19 99.0 334 30.5
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 7.3e-19 99.0 88 53.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 3.6e-18 96.7 82 59.8
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 8.0e-18 95.5 110 45.5
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.1e-17 95.1 96 57.3
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 8.9e-17 92.0 48 100.0
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 2.2e-15 87.4 56 85.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.9e-15 87.0 71 63.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.2e-14 83.6 104 48.1
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.4e-14 82.8 118 42.4
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.7e-13 80.5 84 54.8
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 6.6e-12 75.9 61 59.0
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.9e-11 74.3 93 46.2
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.6e-10 71.2 259 30.1
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.7e-10 69.7 91 45.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 6.8e-09 65.9 276 37.7
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.5e-08 64.7 57 63.2
C08p00760 Brassica napus HOM05D005116 ORTHO05D031782 3.4e-08 63.5 114 39.5
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.9e-07 60.5 159 45.3
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 3.7e-07 60.1 97 37.1


User provided reference genes

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