Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.0e-174 614.4 320 100.0
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.2e-164 583.2 366 86.9
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.0e-110 402.5 373 66.2
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.3e-101 372.1 393 59.8
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.9e-89 332.8 390 55.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.3e-84 317.4 405 53.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.1e-79 300.1 403 52.6
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.7e-79 299.7 199 83.9
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 5.0e-65 252.3 420 44.8
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 4.2e-64 249.2 419 43.9
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 3.6e-63 246.1 417 43.2
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.0e-62 244.6 417 42.9
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-62 244.2 394 44.7
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-61 240.7 402 43.8
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.6e-61 240.0 423 43.5
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.8e-60 235.7 419 41.1
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.5e-58 229.6 426 41.8
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.2e-56 223.0 419 41.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.0e-54 216.5 422 41.5
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 5.9e-50 202.2 419 40.1
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.3e-46 190.3 210 54.3
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 8.9e-46 188.3 208 55.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 3.4e-45 186.4 173 61.8
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.2e-36 157.1 421 31.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.1e-35 152.9 297 38.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.0e-34 150.6 213 44.6
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 7.8e-34 148.7 289 38.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 7.8e-34 148.7 211 43.6
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.7e-33 147.5 211 43.6
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 3.0e-33 146.7 283 38.9
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.1e-32 144.8 216 42.6
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.5e-32 143.7 173 52.0
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.5e-32 143.7 281 39.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 3.3e-32 143.3 173 51.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 7.3e-32 142.1 211 41.2
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 9.5e-32 141.7 173 50.9
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 9.5e-32 141.7 173 50.9
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 9.5e-32 141.7 241 41.1
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.6e-31 139.8 169 48.5
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 4.7e-31 139.4 304 37.5
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.8e-30 137.5 211 42.7
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.8e-30 137.5 161 47.2
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.3e-30 137.1 213 39.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 3.1e-30 136.7 225 40.0
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.0e-30 136.3 237 37.6
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.2e-30 136.0 210 41.9
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 6.8e-30 135.6 165 47.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 6.8e-30 135.6 257 37.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 8.9e-30 135.2 219 37.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.2e-29 134.8 211 41.7
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-29 134.8 210 41.9
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.2e-29 134.8 170 46.5
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-29 134.4 165 50.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.5e-29 134.4 239 38.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.6e-29 133.7 250 38.8
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.6e-29 133.7 235 39.6
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.6e-29 133.7 287 35.5
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.6e-29 133.7 211 39.8
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 4.4e-29 132.9 281 37.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 4.4e-29 132.9 170 44.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 9.9e-29 131.7 170 46.5
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 9.9e-29 131.7 308 37.0
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 1.3e-28 131.3 101 74.3
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.7e-28 131.0 207 40.1
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.2e-28 130.6 212 41.5
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.2e-28 130.6 211 40.8
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.9e-28 130.2 293 36.5
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.7e-28 129.8 212 41.0
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.9e-28 129.4 211 40.8
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 6.4e-28 129.0 235 37.9
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 8.3e-28 128.6 169 45.0
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.4e-27 127.9 209 36.4
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.4e-27 127.9 183 41.5
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.4e-27 127.9 161 46.6
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.4e-27 127.9 174 42.5
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.9e-27 127.5 285 36.5
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.4e-27 127.1 235 37.4
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.4e-27 127.1 214 38.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 4.1e-27 126.3 209 37.8
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 5.4e-27 125.9 255 37.6
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.4e-27 125.9 220 38.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 5.4e-27 125.9 279 33.3
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 7.1e-27 125.6 170 44.1
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.2e-26 124.8 216 39.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-26 124.8 254 37.8
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.2e-26 124.8 169 44.4
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-26 124.4 254 37.8
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.6e-26 124.4 213 39.4
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.6e-26 124.4 246 35.8
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.7e-26 123.6 213 39.9
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.7e-26 123.6 213 39.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 3.5e-26 123.2 213 39.0
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.5e-26 123.2 213 39.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 4.6e-26 122.9 213 36.6
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.6e-26 122.9 216 38.9
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.0e-25 121.7 213 36.6
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.0e-25 121.7 247 38.5
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.0e-25 121.7 208 38.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.0e-25 121.7 292 35.6
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.3e-25 120.6 213 38.0
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.3e-25 120.6 292 37.0
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.3e-25 120.6 175 42.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.0e-25 120.2 292 37.3
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.0e-25 120.2 292 37.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 3.0e-25 120.2 263 38.0
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 5.1e-25 119.4 275 35.6
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 5.1e-25 119.4 223 35.9
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-24 118.2 213 38.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 2.5e-24 117.1 250 35.6
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.5e-24 117.1 169 44.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.3e-24 116.7 148 43.9
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 4.3e-24 116.3 285 37.2
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 9.5e-24 115.2 266 37.6
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.8e-23 113.6 169 42.0
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.7e-23 112.8 214 36.0
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 8.1e-23 112.1 213 36.2
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.1e-22 111.7 169 42.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-22 111.3 329 32.5
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.8e-22 110.9 232 37.5
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.2e-22 109.4 193 37.8
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 6.8e-22 109.0 191 39.3
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 8.9e-22 108.6 167 40.1
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.0e-21 107.5 218 36.7
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.0e-21 107.5 226 36.3
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 7.6e-21 105.5 214 33.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 2.2e-20 104.0 224 33.9
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.9e-20 103.6 77 68.8
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 6.4e-20 102.4 170 37.1
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 4.1e-19 99.8 171 35.7
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 7.1e-19 99.0 170 36.5
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.7e-18 97.1 171 39.2
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 3.5e-18 96.7 149 38.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 6.0e-18 95.9 287 32.4
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 5.1e-17 92.8 139 43.2
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.1e-16 91.7 173 33.5
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 7.3e-16 89.0 224 31.2
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.2e-15 88.2 224 30.8
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 3.1e-14 83.6 238 31.1
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 2.2e-12 77.4 132 43.9
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 2.2e-12 77.4 73 54.8
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 2.2e-12 77.4 73 54.8
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 7.1e-11 72.4 175 38.3
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 9.3e-11 72.0 62 54.8
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 3.5e-10 70.1 62 56.5
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 3.5e-10 70.1 62 56.5
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 3.5e-10 70.1 62 56.5
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.7e-09 67.8 74 50.0
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 8.7e-09 65.5 132 35.6
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-08 65.1 63 52.4
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 7.3e-08 62.4 55 54.5
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.4e-06 57.4 268 26.9


User provided reference genes

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