Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 4.0e-27 124.0 62 100.0
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 4.0e-27 124.0 62 100.0
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 8.9e-27 122.9 62 98.4
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 8.9e-27 122.9 62 98.4
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 2.2e-25 118.2 63 96.8
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 2.3e-22 108.2 57 93.0
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 5.0e-22 107.1 59 84.7
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 6.6e-22 106.7 57 89.5
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 3.1e-19 97.8 61 75.4
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 3.1e-19 97.8 66 75.8
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 3.1e-19 97.8 59 79.7
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.0e-19 97.4 59 76.3
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 8.9e-19 96.3 55 83.6
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.5e-18 95.5 59 76.3
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 4.4e-18 94.0 62 72.6
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 4.4e-18 94.0 61 72.1
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 5.8e-18 93.6 59 78.0
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 5.8e-18 93.6 59 76.3
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 9.8e-18 92.8 59 76.3
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.3e-17 92.4 55 81.8
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 1.3e-17 92.4 57 77.2
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 8.3e-17 89.7 61 70.5
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 8.3e-17 89.7 59 72.9
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.4e-16 89.0 59 71.2
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 2.4e-16 88.2 59 72.9
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.4e-16 88.2 61 68.9
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 2.4e-16 88.2 59 74.6
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 3.2e-16 87.8 59 71.2
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 3.2e-16 87.8 59 71.2
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 4.1e-16 87.4 57 75.4
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 5.4e-16 87.0 59 67.8
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 5.4e-16 87.0 59 71.2
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 7.0e-16 86.7 57 75.4
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 9.2e-16 86.3 57 73.7
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.2e-16 86.3 57 73.7
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.2e-16 86.3 57 73.7
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.2e-16 86.3 57 73.7
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 9.2e-16 86.3 59 71.2
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.2e-15 85.9 59 69.5
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.2e-15 85.9 61 63.9
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.6e-15 85.5 59 71.2
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.6e-15 85.5 59 69.5
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.6e-15 85.5 59 64.4
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 2.0e-15 85.1 59 66.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.7e-15 84.7 59 64.4
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 2.7e-15 84.7 59 69.5
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.7e-15 84.7 57 71.9
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.7e-15 84.7 57 70.2
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 7.8e-15 83.2 55 70.9
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 7.8e-15 83.2 55 67.3
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.0e-14 82.8 57 66.7
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 3.0e-14 81.3 59 64.4
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 3.9e-14 80.9 59 66.1
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 3.9e-14 80.9 59 61.0
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 3.9e-14 80.9 59 66.1
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 3.9e-14 80.9 59 64.4
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.6e-14 80.1 59 57.6
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 6.6e-14 80.1 59 57.6
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 6.6e-14 80.1 58 65.5
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 6.6e-14 80.1 83 53.0
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 6.6e-14 80.1 58 65.5
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 8.6e-14 79.7 53 69.8
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 1.1e-13 79.3 58 62.1
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.1e-13 79.3 57 66.7
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 1.5e-13 79.0 59 64.4
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 1.5e-13 79.0 58 62.1
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 1.5e-13 79.0 57 61.4
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.5e-13 79.0 58 62.1
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.9e-13 78.6 64 62.5
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.9e-13 78.6 59 61.0
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 1.9e-13 78.6 57 61.4
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 2.5e-13 78.2 59 62.7
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 5.6e-13 77.0 59 59.3
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.2e-12 75.9 59 57.6
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.6e-12 75.5 52 69.2
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 6.2e-12 73.6 57 61.4
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 6.2e-12 73.6 59 61.0
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 6.2e-12 73.6 57 66.7
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.1e-11 72.8 57 56.1
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.8e-11 72.0 59 50.8
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.8e-11 72.0 43 74.4
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 2.3e-11 71.6 60 58.3
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 5.2e-11 70.5 52 65.4
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.6e-10 68.2 60 55.0
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.6e-10 68.2 60 50.0
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 4.4e-10 67.4 59 59.3
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.8e-10 67.0 42 73.8
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.8e-10 66.2 43 72.1
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 9.8e-10 66.2 52 63.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 8.3e-09 63.2 46 63.0
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.3e-09 63.2 87 46.0
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.1e-08 62.8 61 50.8
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 7.1e-08 60.1 38 68.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.6e-06 53.1 57 50.9


User provided reference genes

Program Settings