Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 7.4e-65 250.4 125 100.0
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 7.4e-65 250.4 125 100.0
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 1.0e-26 123.6 90 68.9
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 4.0e-26 121.7 90 67.8
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 2.2e-24 115.9 91 64.8
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 2.9e-24 115.5 91 63.7
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 4.9e-24 114.8 91 63.7
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 6.4e-24 114.4 91 63.7
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.4e-23 113.2 91 60.4
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.9e-23 112.8 91 63.7
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 3.2e-23 112.1 90 63.3
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 3.2e-23 112.1 90 63.3
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 5.4e-23 111.3 91 62.6
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 2.0e-22 109.4 90 61.1
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.0e-21 107.1 90 58.9
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 3.3e-20 102.1 113 47.8
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.6e-19 98.6 113 46.9
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 8.0e-19 97.4 113 47.8
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 3.1e-18 95.5 88 52.3
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 4.0e-18 95.1 89 53.9
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 6.8e-18 94.4 87 51.7
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 6.8e-18 94.4 87 52.9
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.5e-17 93.2 90 50.0
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.0e-17 92.8 98 50.0
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 3.4e-17 92.0 87 54.0
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 4.4e-17 91.7 90 47.8
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 4.4e-17 91.7 88 50.0
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 4.4e-17 91.7 112 44.6
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 4.4e-17 91.7 90 51.1
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 5.8e-17 91.3 99 47.5
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 5.8e-17 91.3 87 54.0
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 7.5e-17 90.9 87 52.9
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 7.5e-17 90.9 89 50.6
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.2e-16 89.4 113 41.6
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.9e-16 89.0 81 54.3
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 3.7e-16 88.6 90 46.7
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 3.7e-16 88.6 87 49.4
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 6.4e-16 87.8 88 50.0
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 6.4e-16 87.8 112 44.6
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 6.4e-16 87.8 96 45.8
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 8.3e-16 87.4 89 51.7
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 8.3e-16 87.4 89 50.6
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.1e-15 87.0 83 54.2
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.9e-15 86.3 89 51.7
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.9e-15 86.3 102 44.1
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.4e-15 85.9 113 40.7
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 2.4e-15 85.9 89 50.6
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 3.2e-15 85.5 91 46.2
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 3.2e-15 85.5 89 46.1
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 3.2e-15 85.5 111 42.3
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 3.2e-15 85.5 90 44.4
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 4.1e-15 85.1 90 44.4
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 4.1e-15 85.1 121 38.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.1e-15 85.1 86 47.7
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 4.1e-15 85.1 88 51.1
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 4.1e-15 85.1 114 43.9
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 4.1e-15 85.1 90 46.7
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 4.1e-15 85.1 89 49.4
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.4e-15 84.7 89 46.1
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 5.4e-15 84.7 89 50.6
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 5.4e-15 84.7 96 44.8
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 7.0e-15 84.3 99 45.5
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 9.2e-15 84.0 87 44.8
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 9.2e-15 84.0 89 50.6
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 9.2e-15 84.0 99 45.5
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.2e-14 83.6 113 42.5
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-14 83.6 113 43.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-14 83.6 113 42.5
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 1.6e-14 83.2 90 42.2
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.6e-14 83.2 92 47.8
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.6e-14 83.2 113 41.6
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.6e-14 83.2 90 43.3
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 2.1e-14 82.8 92 47.8
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 2.1e-14 82.8 90 43.3
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 3.5e-14 82.0 114 43.0
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.0e-14 81.3 113 42.5
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 7.8e-14 80.9 90 42.2
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 7.8e-14 80.9 86 44.2
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.0e-13 80.5 86 51.2
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 1.3e-13 80.1 87 46.0
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.7e-13 79.7 91 46.2
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 1.7e-13 79.7 88 44.3
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 3.0e-13 79.0 83 45.8
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 3.9e-13 78.6 108 40.7
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 5.1e-13 78.2 87 48.3
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 6.6e-13 77.8 89 48.3
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 6.6e-13 77.8 90 45.6
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 8.6e-13 77.4 98 44.9
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 8.6e-13 77.4 91 42.9
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.9e-12 76.3 89 47.2
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.5e-12 75.9 83 44.6
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 7.3e-12 74.3 95 40.0
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 7.3e-12 74.3 93 39.8
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.6e-11 73.2 105 42.9
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 2.8e-11 72.4 84 44.0
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.7e-11 71.6 105 41.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.1e-11 70.9 105 41.0
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 2.2e-08 62.8 85 40.0
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.9e-07 59.7 50 58.0
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.9e-07 59.7 84 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 3.2e-07 58.9 115 33.9
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 3.2e-07 58.9 115 33.9
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 3.2e-07 58.9 95 36.8
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 5.4e-07 58.2 63 47.6
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 7.1e-07 57.8 79 44.3
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.6e-06 55.1 49 55.1
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 4.6e-06 55.1 89 33.7


User provided reference genes

Program Settings