Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-140 501.9 268 100.0
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.0e-140 501.9 268 100.0
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-120 436.4 244 96.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-118 430.3 235 98.7
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.1e-118 430.3 235 98.7
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.5e-91 340.1 244 77.5
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.3e-90 337.0 243 77.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-86 323.6 235 76.2
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.9e-86 323.2 235 76.6
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 5.6e-86 321.6 235 76.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 7.6e-83 311.2 264 68.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.4e-82 307.8 241 69.3
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.1e-76 289.3 236 68.2
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.6e-75 284.6 240 65.8
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.6e-72 275.4 249 62.2
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.1e-64 250.0 233 59.2
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 9.4e-57 224.6 233 51.5
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.2e-53 213.4 147 61.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.3e-53 211.8 147 61.2
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.2e-53 211.5 147 61.2
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.8e-52 210.3 147 60.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.1e-52 209.1 147 61.2
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.1e-52 209.1 147 61.2
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.4e-51 206.1 144 59.0
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.5e-51 205.7 147 59.2
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.7e-51 204.9 144 59.0
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.0e-50 204.5 147 59.2
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.7e-50 203.8 144 58.3
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.4e-49 200.7 144 57.6
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.9e-49 200.3 146 55.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.5e-49 199.9 145 57.2
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 3.2e-49 199.5 145 56.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.2e-49 199.1 145 58.6
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.5e-49 198.7 146 54.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 7.2e-49 198.4 145 56.6
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 9.4e-49 198.0 147 56.5
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.2e-48 197.6 146 56.2
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.6e-48 197.2 145 55.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.6e-48 197.2 145 55.9
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 4.7e-48 195.7 146 54.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 4.7e-48 195.7 145 55.2
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.7e-48 195.7 145 55.9
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.0e-47 194.5 145 54.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.4e-47 194.1 145 54.5
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.8e-47 193.7 145 54.5
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.3e-47 193.4 145 55.2
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.3e-47 193.4 144 56.9
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 3.0e-47 193.0 145 55.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 3.9e-47 192.6 145 55.2
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 3.9e-47 192.6 146 54.1
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 5.1e-47 192.2 148 57.4
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 5.1e-47 192.2 145 55.2
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 5.1e-47 192.2 146 54.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 8.8e-47 191.4 145 54.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 8.8e-47 191.4 226 44.7
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.8e-47 191.4 154 56.5
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.1e-46 191.0 145 54.5
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.1e-46 191.0 145 54.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.5e-46 190.7 145 55.2
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.5e-46 190.7 144 55.6
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-46 190.3 145 53.1
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.0e-46 190.3 253 40.7
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 2.0e-46 190.3 144 55.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.0e-46 190.3 146 54.1
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.0e-46 190.3 145 53.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.3e-46 189.5 145 55.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 4.4e-46 189.1 144 54.9
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 4.4e-46 189.1 145 53.1
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 5.7e-46 188.7 145 53.8
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.7e-46 188.0 146 53.4
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 9.7e-46 188.0 144 54.9
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.7e-45 187.2 145 53.8
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.7e-45 186.0 148 53.4
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 8.2e-45 184.9 144 54.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.1e-44 184.5 141 55.3
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.4e-44 184.1 145 51.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.4e-44 184.1 145 51.7
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.8e-44 183.7 145 51.0
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.8e-44 183.7 138 55.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-44 183.7 145 53.1
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.4e-44 183.3 154 50.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.1e-44 183.0 145 51.0
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.0e-44 181.8 145 53.1
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 9.1e-44 181.4 224 42.4
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.2e-43 181.0 145 51.7
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.6e-43 179.9 213 43.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.6e-43 179.9 153 52.3
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 3.5e-43 179.5 146 52.7
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 3.5e-43 179.5 136 55.9
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.5e-43 179.5 156 50.6
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 4.5e-43 179.1 171 47.4
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 5.9e-43 178.7 144 52.1
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 7.7e-43 178.3 141 51.8
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.3e-42 177.6 140 55.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-42 177.2 146 52.7
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-42 177.2 146 52.7
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.8e-42 176.0 146 52.1
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 8.5e-42 174.9 153 50.3
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.1e-41 174.5 146 51.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.1e-41 174.5 239 38.5
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.4e-41 174.1 142 51.4
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.5e-41 173.3 145 50.3
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.2e-41 172.6 149 51.0
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.5e-41 172.2 167 45.5
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 7.2e-41 171.8 169 45.6
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 4.7e-40 169.1 121 56.2
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.7e-40 169.1 118 58.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-40 168.7 235 39.6
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 6.1e-40 168.7 125 54.4
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 5.2e-39 165.6 168 45.2
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.1e-38 164.5 130 53.1
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.6e-38 163.3 118 57.6
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.6e-38 163.3 174 43.7
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.4e-38 162.5 143 45.5
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 9.7e-38 161.4 121 52.1
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.7e-37 160.6 162 45.1
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 6.3e-37 158.7 104 61.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.3e-37 158.7 198 37.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.1e-36 157.9 121 52.1
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.6e-35 154.1 107 57.0
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.5e-35 152.9 199 38.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 4.5e-35 152.5 170 42.9
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.5e-35 152.5 193 39.4
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.7e-35 151.8 143 42.0
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.0e-34 151.4 105 56.2
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.0e-34 151.4 165 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.3e-34 151.0 144 41.7
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.3e-34 151.0 106 54.7
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.5e-33 146.7 177 40.1
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 7.2e-33 145.2 165 42.4
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.5e-30 137.5 133 42.1
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 7.5e-30 135.2 106 50.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.2e-27 127.9 143 33.6
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.2e-27 127.9 153 40.5
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.5e-27 126.3 89 55.1
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 7.7e-27 125.2 96 51.0
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.9e-26 123.2 90 53.3
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 5.0e-26 122.5 136 44.1
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 6.5e-26 122.1 119 39.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.5e-25 120.9 88 55.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.5e-25 120.2 88 54.5
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.2e-25 119.8 140 36.4
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 4.2e-25 119.4 145 39.3
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.5e-25 119.0 89 53.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.4e-22 109.8 148 34.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 8.3e-21 105.1 138 34.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.2e-19 101.3 146 37.7
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 8.6e-18 95.1 144 36.1
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.9e-17 94.0 82 48.8
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.3e-17 93.2 81 48.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 4.2e-17 92.8 64 53.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.8e-16 90.1 92 45.7
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.6e-16 89.7 72 50.0
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.3e-15 87.0 148 33.1
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 5.7e-14 82.4 68 48.5
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.3e-13 81.3 68 48.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.3e-13 81.3 65 49.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.1e-12 78.2 59 57.6
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.4e-12 77.8 55 61.8
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.8e-12 77.4 166 30.7
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 5.8e-06 55.8 85 32.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 7.5e-06 55.5 40 52.5


User provided reference genes

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