Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 2.4e-101 372.1 180 100.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 2.4e-101 372.1 180 100.0
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 4.5e-95 351.3 180 93.3
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.7e-94 349.4 181 95.0
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.7e-94 349.4 181 95.0
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.6e-84 316.2 184 85.3
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.8e-81 305.4 179 84.4
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.2e-79 300.1 184 81.5
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 5.8e-79 297.7 183 82.5
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.3e-78 296.6 183 82.0
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 8.4e-78 293.9 185 79.5
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-77 293.5 183 80.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 2.5e-77 292.4 183 80.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 5.5e-77 291.2 182 80.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.5e-76 288.5 170 83.5
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.9e-74 282.7 183 78.7
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.4e-71 271.9 187 75.4
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.6e-60 235.0 181 68.0
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 8.8e-59 230.7 175 66.9
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-53 213.8 179 63.7
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.9e-53 213.0 176 63.1
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.5e-53 212.6 180 63.9
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 6.1e-52 208.0 177 62.1
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.4e-51 206.8 176 61.4
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 6.7e-51 204.5 176 60.8
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 6.7e-51 204.5 176 60.8
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 6.7e-51 204.5 176 60.8
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.7e-49 199.9 187 61.5
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 9.1e-48 194.1 192 57.3
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.7e-46 189.9 175 59.4
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 8.8e-43 177.6 178 57.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.2e-41 171.0 187 52.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 8.2e-41 171.0 186 53.2
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 2.9e-38 162.5 186 51.6
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.5e-38 161.0 186 51.6
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 7.2e-37 157.9 125 67.2
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.6e-36 155.6 191 49.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 4.7e-36 155.2 183 52.5
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.1e-36 154.8 191 48.7
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 6.1e-36 154.8 178 47.8
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 8.0e-36 154.5 166 51.8
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.8e-35 153.3 174 51.7
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.2e-35 151.8 191 49.2
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 8.8e-35 151.0 172 50.0
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 7.5e-34 147.9 182 47.8
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 9.8e-34 147.5 185 44.9
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.3e-33 147.1 170 50.6
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.2e-33 146.4 172 49.4
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.2e-33 146.4 176 46.0
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 4.8e-33 145.2 195 43.6
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 178 47.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.4e-32 143.7 185 43.2
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.8e-32 143.3 179 47.5
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.1e-32 142.1 165 48.5
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.4e-32 141.7 191 40.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 5.4e-32 141.7 183 47.0
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.2e-31 140.6 165 47.9
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.2e-31 140.6 147 58.5
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.6e-31 140.2 181 45.9
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.7e-31 139.4 184 43.5
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-31 139.0 182 45.6
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.5e-31 139.0 188 44.1
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 3.5e-31 139.0 185 45.4
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 7.7e-31 137.9 172 48.3
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.3e-30 137.1 178 44.9
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.7e-30 136.7 178 44.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.3e-30 136.3 167 49.7
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.3e-30 136.3 184 45.7
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.3e-30 136.3 176 47.2
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.9e-30 136.0 180 47.2
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.8e-30 135.6 180 43.3
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-30 135.6 174 47.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-30 135.6 174 46.0
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 5.0e-30 135.2 189 41.8
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.6e-30 134.4 181 47.0
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.6e-30 134.4 180 47.2
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.1e-29 134.0 181 45.3
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.5e-29 133.7 189 45.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.5e-29 133.7 168 46.4
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.9e-29 133.3 175 44.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.5e-29 132.9 186 43.5
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 4.2e-29 132.1 180 45.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 5.5e-29 131.7 197 41.1
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.5e-29 131.7 191 47.6
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 7.2e-29 131.3 178 46.6
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.2e-29 131.3 189 40.7
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 7.2e-29 131.3 179 42.5
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 9.5e-29 131.0 179 44.7
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.2e-28 130.6 185 44.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.2e-28 130.6 171 45.0
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.2e-28 130.6 179 41.9
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-28 129.4 186 46.8
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 2.8e-28 129.4 187 42.2
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.6e-28 129.0 186 43.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 4.7e-28 128.6 189 40.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 4.7e-28 128.6 163 49.1
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.1e-28 128.3 178 40.4
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.4e-27 127.1 178 43.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.4e-27 127.1 182 46.2
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.8e-27 126.7 173 45.7
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.8e-27 126.7 186 45.7
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.8e-27 126.7 176 45.5
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-27 125.9 170 47.1
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.0e-27 125.9 186 44.6
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 4.0e-27 125.6 196 39.8
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 5.2e-27 125.2 186 39.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 8.8e-27 124.4 172 44.8
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 8.8e-27 124.4 159 42.8
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.2e-26 124.0 180 45.6
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 4.4e-26 122.1 176 41.5
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.5e-26 121.3 194 41.2
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.3e-25 120.6 191 42.9
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.3e-25 120.6 177 46.3
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.3e-25 120.6 177 44.6
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.7e-25 120.2 178 45.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-25 119.4 177 44.6
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.8e-25 119.4 194 41.8
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.8e-25 119.4 177 43.5
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.9e-25 118.6 182 43.4
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 4.9e-25 118.6 172 43.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 8.3e-25 117.9 196 42.9
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.3e-25 117.9 196 42.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 8.3e-25 117.9 186 43.0
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-24 117.1 165 45.5
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.8e-24 116.7 177 40.7
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.1e-24 115.9 196 42.3
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.1e-24 115.9 174 40.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-24 115.5 160 45.6
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.4e-24 115.2 166 45.2
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 7.0e-24 114.8 179 43.6
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.0e-24 114.8 177 43.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.2e-23 114.0 194 38.1
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.0e-23 113.2 173 42.2
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.0e-23 113.2 170 38.8
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 2.7e-23 112.8 211 37.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.5e-23 112.5 175 43.4
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-23 112.1 172 40.1
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.0e-22 110.9 162 43.2
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-21 106.7 159 43.4
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.5e-21 106.3 171 39.2
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 3.3e-21 105.9 174 40.2
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.3e-21 105.9 169 39.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 4.3e-21 105.5 180 41.7
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 4.3e-21 105.5 187 38.0
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-19 99.0 136 45.6
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 7.5e-18 94.7 179 38.0
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 3.7e-17 92.4 171 38.0
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 8.3e-17 91.3 168 35.7
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 8.3e-17 91.3 164 40.2
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 8.3e-17 91.3 206 34.0
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.2e-16 89.4 175 39.4
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 4.1e-16 89.0 172 39.5
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.0e-16 88.2 165 40.0
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 7.0e-16 88.2 158 40.5
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-15 87.4 153 41.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.8e-15 84.7 122 39.3
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 6.6e-14 81.6 180 35.0
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.6e-14 81.6 150 36.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 4.3e-13 79.0 204 31.9
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.6e-12 77.0 198 33.3
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-12 76.6 107 41.1
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.8e-11 73.6 181 34.3
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.6e-10 69.7 212 30.2
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 3.4e-10 69.3 198 31.8
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-09 66.2 98 41.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-09 66.2 98 42.9
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 6.4e-09 65.1 140 30.0
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 9.2e-08 61.2 122 35.2
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.0e-07 60.1 187 29.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-07 59.7 143 34.3
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.3e-06 57.4 177 29.9
Manes.04G096900 Manihot esculenta HOM05D001131 ORTHO05D000972 3.9e-06 55.8 199 29.6
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-06 55.5 56 53.6
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 8.6e-06 54.7 160 25.6
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 8.6e-06 54.7 91 38.5


User provided reference genes

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