Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 1.8e-32 142.1 78 100.0
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 4.8e-30 134.0 75 96.0
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 3.5e-28 127.9 74 89.2
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 8.5e-27 123.2 74 89.2
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.0e-24 116.3 74 82.4
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 1.0e-24 116.3 74 82.4
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.0e-24 116.3 74 82.4
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 2.2e-22 108.6 76 76.3
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.1e-21 106.3 74 75.7
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 7.0e-21 103.6 76 75.0
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 9.1e-21 103.2 75 74.7
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 1.2e-20 102.8 75 76.0
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 1.2e-20 102.8 75 76.0
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 2.7e-20 101.7 74 70.3
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 2.7e-20 101.7 74 70.3
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 3.5e-20 101.3 76 75.0
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 4.5e-20 100.9 76 76.3
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.0e-19 99.8 76 71.1
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.3e-19 99.4 74 68.9
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 1.3e-19 99.4 74 68.9
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 1.7e-19 99.0 76 68.4
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 3.6e-17 91.3 62 75.8
C08p52400 Brassica napus HOM05D004826 ORTHO05D042801 1.2e-12 76.3 51 84.3
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 4.6e-12 74.3 84 56.0
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.7e-11 72.4 77 53.2
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 3.9e-11 71.2 77 54.5
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 3.9e-11 71.2 83 48.2
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.0e-11 70.9 81 51.9
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 6.6e-11 70.5 79 54.4
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 8.6e-11 70.1 77 53.2
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.1e-10 69.7 81 50.6
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.1e-10 69.7 81 50.6
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.1e-10 69.7 81 50.6
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 1.5e-10 69.3 77 51.9
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 2.5e-10 68.6 82 43.9
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 2.5e-10 68.6 82 45.1
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 3.3e-10 68.2 77 53.2
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 5.6e-10 67.4 83 48.2
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.6e-10 67.4 81 49.4
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 9.5e-10 66.6 83 49.4
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 9.5e-10 66.6 77 51.9
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 9.5e-10 66.6 77 50.6
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.2e-09 66.2 83 53.0
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-09 65.9 83 47.0
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-09 65.9 83 47.0
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.6e-09 65.9 83 47.0
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.1e-09 65.5 83 48.2
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 2.1e-09 65.5 81 49.4
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 3.6e-09 64.7 81 51.9
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 4.7e-09 64.3 82 45.1
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 4.7e-09 64.3 83 47.0
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 6.2e-09 63.9 77 50.6
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 6.2e-09 63.9 85 47.1
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 8.0e-09 63.5 82 43.9
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 8.0e-09 63.5 46 63.0
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 8.0e-09 63.5 46 63.0
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 8.0e-09 63.5 46 63.0
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 8.0e-09 63.5 46 63.0
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 8.0e-09 63.5 46 63.0
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 8.0e-09 63.5 83 48.2
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.0e-08 63.2 77 49.4
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.0e-08 63.2 84 46.4
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.0e-08 63.2 84 46.4
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 1.0e-08 63.2 77 48.1
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.0e-08 63.2 83 50.6
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 1.4e-08 62.8 85 47.1
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 2.3e-08 62.0 77 48.1
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 3.1e-08 61.6 83 47.0
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 4.0e-08 61.2 83 43.4
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 4.0e-08 61.2 77 48.1
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 6.8e-08 60.5 83 49.4
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 6.8e-08 60.5 81 45.7
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.2e-07 59.7 76 46.1
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.5e-07 59.3 71 50.7
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 1.5e-07 59.3 83 45.8
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 1.5e-07 59.3 79 49.4
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 1.5e-07 59.3 83 44.6
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 2.0e-07 58.9 83 44.6
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.6e-07 58.5 83 44.6
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.6e-07 58.5 80 45.0
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 2.6e-07 58.5 83 45.8
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 2.6e-07 58.5 85 42.4
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 3.4e-07 58.2 77 45.5
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 4.4e-07 57.8 85 43.5
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 4.4e-07 57.8 83 45.8
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 4.4e-07 57.8 83 45.8
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 9.8e-07 56.6 83 42.2
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.7e-06 55.8 83 45.8
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 1.7e-06 55.8 84 42.9
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.2e-06 55.5 84 46.4
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 6.4e-06 53.9 82 37.8
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 8.3e-06 53.5 86 45.3


User provided reference genes

Program Settings