Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 7.2e-59 230.3 113 100.0
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 3.1e-46 188.3 97 95.9
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 3.1e-46 188.3 97 95.9
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 2.8e-39 165.2 98 81.6
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 3.1e-38 161.8 101 77.2
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 4.1e-38 161.4 101 80.2
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.0e-37 159.1 101 76.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 2.0e-37 159.1 101 76.2
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.5e-35 152.9 102 71.6
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.9e-35 152.5 101 74.3
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 1.2e-34 149.8 102 71.6
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.6e-34 149.4 101 74.3
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-34 149.4 101 74.3
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.6e-34 149.4 101 74.3
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 8.0e-34 147.1 101 70.3
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 3.4e-32 141.7 100 66.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.0e-28 130.2 96 63.5
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-27 126.7 97 72.2
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 9.8e-24 113.6 101 57.4
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 2.7e-21 105.5 92 56.5
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.5e-21 105.1 92 54.3
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 7.8e-21 104.0 92 54.3
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.7e-20 102.8 93 53.8
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 2.3e-20 102.4 92 52.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 8.6e-20 100.5 96 50.0
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.9e-19 99.4 96 50.0
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 7.3e-19 97.4 96 49.0
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 9.5e-19 97.1 91 50.5
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 9.5e-19 97.1 96 46.9
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 9.5e-19 97.1 97 51.5
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.2e-18 96.7 95 48.4
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.2e-18 96.7 96 49.0
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.6e-18 96.3 97 45.4
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.6e-18 96.3 96 47.9
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 2.8e-18 95.5 99 47.5
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 2.8e-18 95.5 91 50.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 2.8e-18 95.5 96 49.0
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 2.8e-18 95.5 91 50.5
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 4.7e-18 94.7 96 46.9
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 8.0e-18 94.0 58 75.9
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 8.0e-18 94.0 96 45.8
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 1.1e-17 93.6 87 49.4
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.1e-17 93.6 96 46.9
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 5.2e-17 91.3 95 43.2
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 5.2e-17 91.3 96 46.9
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 6.8e-17 90.9 93 51.6
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 6.8e-17 90.9 93 51.6
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 6.8e-17 90.9 93 51.6
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 6.8e-17 90.9 92 46.7
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 6.8e-17 90.9 92 48.9
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 6.8e-17 90.9 93 49.5
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 8.9e-17 90.5 93 45.2
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.2e-16 90.1 93 45.2
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.5e-16 89.7 95 43.2
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.5e-16 89.7 96 49.0
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.5e-16 89.7 96 45.8
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 2.0e-16 89.4 90 43.3
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.0e-16 89.4 93 45.2
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 2.0e-16 89.4 93 45.2
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.0e-16 89.4 91 46.2
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 2.6e-16 89.0 93 47.3
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 3.4e-16 88.6 93 50.5
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 3.4e-16 88.6 90 46.7
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.4e-16 88.6 96 44.8
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 3.4e-16 88.6 93 46.2
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 3.4e-16 88.6 90 45.6
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 4.4e-16 88.2 92 45.7
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 4.4e-16 88.2 91 47.3
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 7.5e-16 87.4 96 43.8
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 7.5e-16 87.4 93 44.1
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.3e-15 86.7 93 43.0
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.3e-15 86.7 96 44.8
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.7e-15 86.3 96 43.8
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.7e-15 86.3 92 44.6
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-15 85.9 96 42.7
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-15 85.9 96 42.7
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-15 85.9 96 42.7
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 3.7e-15 85.1 72 54.2
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 3.7e-15 85.1 93 43.0
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 3.7e-15 85.1 91 48.4
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 4.9e-15 84.7 90 43.3
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 8.3e-15 84.0 97 43.3
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.4e-14 83.2 98 42.9
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 3.2e-14 82.0 94 38.3
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 5.4e-14 81.3 76 47.4
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 7.0e-14 80.9 95 44.2
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 7.0e-14 80.9 97 42.3
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 9.2e-14 80.5 96 39.6
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.2e-13 80.1 96 38.5
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 1.2e-13 80.1 95 44.2
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 3.5e-13 78.6 89 43.8
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.5e-13 78.6 95 43.2
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 3.5e-13 78.6 97 40.2
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 6.0e-13 77.8 94 41.5
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.3e-12 75.9 101 36.6
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.3e-12 75.9 98 33.7
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 2.3e-12 75.9 94 40.4
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.0e-12 74.7 61 52.5
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 6.6e-12 74.3 100 43.0
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.1e-11 73.6 100 38.0
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-11 72.8 103 40.8
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.9e-11 72.8 97 41.2
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 2.5e-11 72.4 96 38.5
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 4.3e-11 71.6 93 39.8
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 4.3e-11 71.6 93 39.8
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 5.6e-11 71.2 79 46.8
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 2.8e-10 68.9 50 60.0
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 3.6e-10 68.6 72 44.4
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 4.7e-10 68.2 93 36.6
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 8.1e-10 67.4 71 46.5
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 2.3e-09 65.9 87 34.5
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 4.0e-09 65.1 93 33.3
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 6.8e-09 64.3 79 44.3
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 8.9e-09 63.9 98 33.7
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 2.6e-08 62.4 64 42.2
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 3.4e-08 62.0 83 36.1
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 7.5e-08 60.8 90 36.7
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 9.9e-08 60.5 95 34.7
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.3e-07 60.1 57 45.6


User provided reference genes

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