Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67420 Brassica napus HOM05D016291 ORTHO05D015389 2.6e-82 308.5 141 100.0
Thhalv10008909m.g Eutrema salsugineum HOM05D016291 ORTHO05D015389 2.6e-21 105.9 136 41.2
A01p36520 Brassica napus HOM05D016291 ORTHO05D015389 3.0e-14 82.4 160 35.6
C01p46290 Brassica napus HOM05D016291 ORTHO05D015389 3.0e-14 82.4 161 36.6
BolC1t04591H Brassica oleracea HOM05D016291 ORTHO05D015389 3.0e-14 82.4 161 36.6
BraA01t03715Z Brassica rapa HOM05D016291 ORTHO05D015389 3.0e-14 82.4 160 35.6
Thhalv10022133m.g Eutrema salsugineum HOM05D032122 ORTHO05D015389 7.7e-10 67.8 124 36.3
Aa31LG9G6480 Aethionema arabicum HOM05D008374 ORTHO05D010264 2.2e-09 66.2 54 51.9
Glyma.17G172100 Glycine max HOM05D000187 ORTHO05D019227 5.0e-09 65.1 60 41.7
Glyma.17G172200 Glycine max HOM05D000187 ORTHO05D019227 5.0e-09 65.1 60 41.7
Sp4g04960 Schrenkiella parvula HOM05D008317 ORTHO05D012776 6.5e-09 64.7 63 49.2
AUR62006118 Chenopodium quinoa HOM05D000354 ORTHO05D000717 8.5e-09 64.3 70 41.4
Aa31LG9G6500 Aethionema arabicum HOM05D008374 ORTHO05D010264 1.1e-08 63.9 98 35.7
AUR62019370 Chenopodium quinoa HOM05D000354 ORTHO05D000747 1.1e-08 63.9 70 41.4
FAN13G1996 Fragaria x ananassa HOM05D026659 ORTHO05D029432 5.5e-08 61.6 51 43.1
Zm00001eb392800 Zea mays HOM05D000086 ORTHO05D031607 5.5e-08 61.6 55 50.9
Sp6g06800 Schrenkiella parvula HOM05D008374 ORTHO05D010264 7.2e-08 61.2 57 42.1
BcaC02g09597 Brassica carinata HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 43.9
BcaC02g09599 Brassica carinata HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 43.9
A04p10810 Brassica napus HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 42.1
C04p44530 Brassica napus HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 43.9
C04p44560 Brassica napus HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 43.9
BolC4t26025H Brassica oleracea HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 43.9
BolC4t26028H Brassica oleracea HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 43.9
BraA04t16748Z Brassica rapa HOM05D008374 ORTHO05D010264 9.4e-08 60.8 57 42.1
Os06g0534950 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D008998 9.4e-08 60.8 47 59.6
FAN08G2932 Fragaria x ananassa HOM05D010503 ORTHO05D017963 1.2e-07 60.5 115 30.4
FAN08G3287 Fragaria x ananassa HOM05D010503 ORTHO05D017963 1.2e-07 60.5 115 30.4
Aa31LG5G16710 Aethionema arabicum HOM05D008374 ORTHO05D010264 1.6e-07 60.1 54 42.6
Thhalv10028356m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 1.6e-07 60.1 53 45.3
Thhalv10029195m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 1.6e-07 60.1 53 45.3
Phvul.003G242800 Phaseolus vulgaris HOM05D000187 ORTHO05D019227 1.6e-07 60.1 60 43.3
VMungo0251G1506 Vigna mungo HOM05D028568 ORTHO05D019227 1.6e-07 60.1 53 47.2
BcaC02g09598 Brassica carinata HOM05D008374 ORTHO05D010264 2.1e-07 59.7 54 42.6
BcaC02g09600 Brassica carinata HOM05D008374 ORTHO05D010264 2.1e-07 59.7 54 42.6
BolC4t26030H Brassica oleracea HOM05D008374 ORTHO05D010264 2.1e-07 59.7 54 42.6
HPP92_022451 Vanilla planifolia HOM05D018615 ORTHO05D003830 2.1e-07 59.7 57 50.9
HPP92_022453 Vanilla planifolia HOM05D018615 ORTHO05D003830 2.1e-07 59.7 57 50.9
HPP92_022456 Vanilla planifolia HOM05D018615 ORTHO05D003830 2.1e-07 59.7 57 50.9
BcaB06g27118 Brassica carinata HOM05D008374 ORTHO05D010264 2.7e-07 59.3 54 44.4
FvH4_5g09840 Fragaria vesca HOM05D010503 ORTHO05D017963 2.7e-07 59.3 115 30.4
AT5G37230 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 3.6e-07 58.9 105 28.6
Lsat_1_v5_gn_5_116300 Lactuca sativa HOM05D006145 ORTHO05D007241 3.6e-07 58.9 74 33.8
Os02g0666900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D005495 3.6e-07 58.9 57 47.4
Sc13g0009720 Simmondsia chinensis HOM05D000354 ORTHO05D000747 3.6e-07 58.9 50 48.0
HPP92_003033 Vanilla planifolia HOM05D000086 ORTHO05D000431 3.6e-07 58.9 55 47.3
AL3G34570 Arabidopsis lyrata HOM05D032122 ORTHO05D015389 4.7e-07 58.5 137 32.1
TWI14G0182 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 4.7e-07 58.5 51 52.9
AL7G45690 Arabidopsis lyrata HOM05D008374 ORTHO05D010264 6.1e-07 58.2 53 41.5
AT5G37200 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 8.0e-07 57.8 55 40.0
AT5G37250 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 8.0e-07 57.8 53 43.4
CSS0032511 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 8.0e-07 57.8 63 44.4
CBR_g50130 Chara braunii HOM05D001172 ORTHO05D001128 8.0e-07 57.8 55 45.5
CsaV3_7G007320 Cucumis sativus L. HOM05D000082 ORTHO05D000038 8.0e-07 57.8 75 41.3
Duzib101G0003 Durio zibethinus HOM05D000082 ORTHO05D000038 8.0e-07 57.8 56 48.2
Lalb_Chr17g0345231 Lupinus albus HOM05D000157 ORTHO05D000311 8.0e-07 57.8 76 36.8
Os11g0114000 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 8.0e-07 57.8 63 49.2
Sp6g10420 Schrenkiella parvula HOM05D008374 ORTHO05D010264 8.0e-07 57.8 73 35.6
Hund04852 Selenicereus undatus HOM05D000354 ORTHO05D000717 8.0e-07 57.8 71 35.2
SGA_v2.0_scaffold389G50558 Striga asiatica HOM05D000082 ORTHO05D000038 8.0e-07 57.8 60 41.7
AUR62019372 Chenopodium quinoa HOM05D000354 ORTHO05D000717 1.0e-06 57.4 80 36.2
Cc00_g30280 Coffea canephora HOM05D000082 ORTHO05D000038 1.0e-06 57.4 62 40.3
Cc11_g12900 Coffea canephora HOM05D000082 ORTHO05D000038 1.0e-06 57.4 62 40.3
Solyc07g055330.3 Solanum lycopersicum HOM05D000082 ORTHO05D008126 1.0e-06 57.4 89 32.6
Sopen07g026890 Solanum pennellii HOM05D000082 ORTHO05D008126 1.0e-06 57.4 89 32.6
Zm00001eb194620 Zea mays HOM05D001172 ORTHO05D001128 1.0e-06 57.4 75 40.0
Ah.10g038380 Amaranthus hybridus HOM05D000082 ORTHO05D000038 1.4e-06 57.0 57 50.9
BcaB02g07007 Brassica carinata HOM05D010088 ORTHO05D012586 1.4e-06 57.0 49 46.9
BcaB03g11844 Brassica carinata HOM05D010088 ORTHO05D012586 1.4e-06 57.0 49 46.9
BcaC05g24901 Brassica carinata HOM05D014092 ORTHO05D016777 1.4e-06 57.0 53 50.9
A05p38160 Brassica napus HOM05D000086 ORTHO05D000311 1.4e-06 57.0 70 41.4
BolC5t29595H Brassica oleracea HOM05D014092 ORTHO05D016777 1.4e-06 57.0 53 50.9
BraA05t22609Z Brassica rapa HOM05D000086 ORTHO05D000311 1.4e-06 57.0 70 41.4
CANSAT64G2090 Cannabis sativa HOM05D000086 ORTHO05D000038 1.4e-06 57.0 52 44.2
THA.LOC104806209 Tarenaya hassleriana HOM05D000086 ORTHO05D000557 1.4e-06 57.0 59 49.2
Ah.13g070060 Amaranthus hybridus HOM05D000354 ORTHO05D000747 1.8e-06 56.6 61 36.1
AT1G74620 Arabidopsis thaliana HOM05D019122 ORTHO05D016451 1.8e-06 56.6 50 50.0
CANSAT64G2496 Cannabis sativa HOM05D000082 ORTHO05D008126 1.8e-06 56.6 83 34.9
Carub.0007s3282 Capsella rubella HOM05D008374 ORTHO05D010264 1.8e-06 56.6 55 41.8
ECA238G1542 Erigeron canadensis HOM05D000187 ORTHO05D005916 1.8e-06 56.6 58 37.9
Gorai.009G148200 Gossypium raimondii HOM05D000086 ORTHO05D008998 1.8e-06 56.6 73 42.5
Medtr8g056930 Medicago truncatula HOM05D000459 ORTHO05D010264 1.8e-06 56.6 56 48.2
THA.LOC104801524 Tarenaya hassleriana HOM05D000157 ORTHO05D010990 1.8e-06 56.6 92 38.0
VMungo0251G2889 Vigna mungo HOM05D000187 ORTHO05D019227 1.8e-06 56.6 52 44.2
EL10Ac2g04179 Beta vulgaris HOM05D016861 ORTHO05D018265 2.3e-06 56.2 85 32.9
BcaB03g16317 Brassica carinata HOM05D008374 ORTHO05D010264 2.3e-06 56.2 54 42.6
BcaC06g36080 Brassica carinata HOM05D008374 ORTHO05D010264 2.3e-06 56.2 54 42.6
A06p06950 Brassica napus HOM05D014092 ORTHO05D016777 2.3e-06 56.2 53 50.9
C07p08070 Brassica napus HOM05D008374 ORTHO05D010264 2.3e-06 56.2 54 42.6
BolC7t41225H Brassica oleracea HOM05D008374 ORTHO05D010264 2.3e-06 56.2 54 42.6
BraA06t23911Z Brassica rapa HOM05D014092 ORTHO05D016777 2.3e-06 56.2 53 50.9
CSS0008729 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 2.3e-06 56.2 81 33.3
ECA233G0699 Erigeron canadensis HOM05D000187 ORTHO05D005916 2.3e-06 56.2 50 40.0
FAN25G0720 Fragaria x ananassa HOM05D006854 ORTHO05D017963 2.3e-06 56.2 111 32.4
MCO15G124 Micromonas commoda HOM05D000187 ORTHO05D001128 2.3e-06 56.2 54 46.3
Os02g0743700 Oryza sativa ssp. japonica HOM05D001172 ORTHO05D001128 2.3e-06 56.2 74 36.5
Os12g0113700 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 2.3e-06 56.2 67 38.8
THA.LOC104809112 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.3e-06 56.2 59 45.8
THA.LOC104809113 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.3e-06 56.2 59 45.8
THA.LOC104809115 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.3e-06 56.2 59 45.8
Zm00001eb254430 Zea mays HOM05D001172 ORTHO05D001128 2.3e-06 56.2 49 51.0
Aa31LG9G6790 Aethionema arabicum HOM05D008374 ORTHO05D010264 3.0e-06 55.8 51 45.1
Aa31LG9G7110 Aethionema arabicum HOM05D008374 ORTHO05D010264 3.0e-06 55.8 51 45.1
arahy.Tifrunner.gnm1.ann1.CF6KXU Arachis hypogaea HOM05D000157 ORTHO05D000311 3.0e-06 55.8 55 43.6
arahy.Tifrunner.gnm1.ann1.DI0R83 Arachis hypogaea HOM05D000157 ORTHO05D000311 3.0e-06 55.8 55 43.6
EL10Ac3g05310 Beta vulgaris HOM05D000354 ORTHO05D000717 3.0e-06 55.8 68 38.2
BcaC02g08342 Brassica carinata HOM05D009340 ORTHO05D012776 3.0e-06 55.8 63 39.7
BcaC03g14663 Brassica carinata HOM05D010088 ORTHO05D012586 3.0e-06 55.8 49 46.9
BcaC07g38306 Brassica carinata HOM05D010088 ORTHO05D012586 3.0e-06 55.8 49 46.9
A07p05080 Brassica napus HOM05D008374 ORTHO05D010264 3.0e-06 55.8 54 42.6
A08p17000 Brassica napus HOM05D010088 ORTHO05D012586 3.0e-06 55.8 48 45.8
C02p20970 Brassica napus HOM05D010088 ORTHO05D012586 3.0e-06 55.8 49 46.9
C04p55500 Brassica napus HOM05D009340 ORTHO05D012776 3.0e-06 55.8 63 39.7
C05p56970 Brassica napus HOM05D000086 ORTHO05D000311 3.0e-06 55.8 70 40.0
BolC2t08240H Brassica oleracea HOM05D010088 ORTHO05D012586 3.0e-06 55.8 49 46.9
BolC4t27076H Brassica oleracea HOM05D009340 ORTHO05D012776 3.0e-06 55.8 63 39.7
BolC5t34360H Brassica oleracea HOM05D000086 ORTHO05D000311 3.0e-06 55.8 70 40.0
BraA07t28300Z Brassica rapa HOM05D008374 ORTHO05D010264 3.0e-06 55.8 54 42.6
AUR62006117 Chenopodium quinoa HOM05D000354 ORTHO05D000717 3.0e-06 55.8 78 35.9
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 3.0e-06 55.8 57 45.6
Gohir.D05G144300 Gossypium hirsutum HOM05D000086 ORTHO05D008998 3.0e-06 55.8 73 42.5
HanXRQChr13g0386721 Helianthus annuus HOM05D001172 ORTHO05D001128 3.0e-06 55.8 126 23.0
Phvul.003G242700 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 3.0e-06 55.8 53 43.4
Rhsim01G0024700 Rhododendron simsii HOM05D010307 ORTHO05D000038 3.0e-06 55.8 55 47.3
Rhsim07G0248900 Rhododendron simsii HOM05D001172 ORTHO05D024737 3.0e-06 55.8 47 46.8
Sed0022808 Sechium edule HOM05D000082 ORTHO05D000038 3.0e-06 55.8 56 44.6
THA.LOC104808919 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 3.0e-06 55.8 59 45.8
HPP92_022755 Vanilla planifolia HOM05D018615 ORTHO05D003830 3.0e-06 55.8 51 52.9
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 4.0e-06 55.5 51 54.9
Os06g0231600 Oryza sativa ssp. japonica HOM05D001172 ORTHO05D001128 4.0e-06 55.5 64 39.1
Sp4g03480 Schrenkiella parvula HOM05D008317 ORTHO05D010808 4.0e-06 55.5 60 38.3
TWI75G0481 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 4.0e-06 55.5 57 45.6
TWI75G0506 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 4.0e-06 55.5 57 45.6
HPP92_005765 Vanilla planifolia HOM05D000082 ORTHO05D000038 4.0e-06 55.5 60 43.3
MSTRG.18695 Avicennia marina HOM05D011230 ORTHO05D013017 5.2e-06 55.1 67 40.3
Migut.K00382 Erythranthe guttata HOM05D003638 ORTHO05D003202 5.2e-06 55.1 50 42.0
Medtr0186s0090 Medicago truncatula HOM05D000459 ORTHO05D010264 5.2e-06 55.1 54 48.1
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 5.2e-06 55.1 57 43.9
Sp3g29000 Schrenkiella parvula HOM05D008374 ORTHO05D010264 5.2e-06 55.1 52 40.4
Sp7g04410 Schrenkiella parvula HOM05D008374 ORTHO05D010264 5.2e-06 55.1 55 41.8
Sc04g0001110 Simmondsia chinensis HOM05D000082 ORTHO05D000038 5.2e-06 55.1 55 47.3
PGSC0003DMG400018407 Solanum tuberosum HOM05D000082 ORTHO05D000038 5.2e-06 55.1 59 52.5
THA.LOC104808913 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 5.2e-06 55.1 59 45.8
ATR0559G046 Amborella trichopoda HOM05D017412 ORTHO05D018285 6.7e-06 54.7 81 33.3
EL10Ac3g05318 Beta vulgaris HOM05D000354 ORTHO05D000747 6.7e-06 54.7 68 35.3
EL10Ac7g17595 Beta vulgaris HOM05D016861 ORTHO05D018265 6.7e-06 54.7 83 32.5
CARHR067900 Cardamine hirsuta HOM05D019122 ORTHO05D016451 6.7e-06 54.7 55 41.8
CARHR093120 Cardamine hirsuta HOM05D016291 ORTHO05D015389 6.7e-06 54.7 54 48.1
Cfa007027 Carpinus fangiana HOM05D001172 ORTHO05D001128 6.7e-06 54.7 62 40.3
Haze_03706 Corylus avellana HOM05D001172 ORTHO05D001128 6.7e-06 54.7 62 40.3
Gohir.A05G142000 Gossypium hirsutum HOM05D000086 ORTHO05D008998 6.7e-06 54.7 57 43.9
HanXRQChr02g0053681 Helianthus annuus HOM05D000354 ORTHO05D000747 6.7e-06 54.7 66 39.4
HanXRQChr14g0457221 Helianthus annuus HOM05D000187 ORTHO05D005916 6.7e-06 54.7 67 35.8
Lalb_Chr01g0006521 Lupinus albus HOM05D001172 ORTHO05D001065 6.7e-06 54.7 74 37.8
Phvul.006G157100 Phaseolus vulgaris HOM05D000086 ORTHO05D012813 6.7e-06 54.7 53 43.4
QL01p017459 Quercus lobata HOM05D009314 ORTHO05D010771 6.7e-06 54.7 90 36.7
THA.LOC104809116 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 6.7e-06 54.7 59 45.8
HPP92_002366 Vanilla planifolia HOM05D001172 ORTHO05D001128 6.7e-06 54.7 60 43.3
Zm00001eb250010 Zea mays HOM05D000354 ORTHO05D005495 6.7e-06 54.7 59 45.8
AT5G41430 Arabidopsis thaliana HOM05D000157 ORTHO05D010990 8.8e-06 54.3 60 43.3
C05p08450 Brassica napus HOM05D014092 ORTHO05D016777 8.8e-06 54.3 53 49.1
CARHR215830 Cardamine hirsuta HOM05D008374 ORTHO05D010264 8.8e-06 54.3 94 31.9
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 8.8e-06 54.3 77 37.7
MELO3C018567.2 Cucumis melo HOM05D000082 ORTHO05D000038 8.8e-06 54.3 64 35.9
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 8.8e-06 54.3 77 37.7
DCAR_015176 Daucus carota HOM05D000086 ORTHO05D000431 8.8e-06 54.3 65 36.9
Duzib264G1174 Durio zibethinus HOM05D001172 ORTHO05D001128 8.8e-06 54.3 62 37.1
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 8.8e-06 54.3 75 38.7
MD17G1263500 Malus domestica HOM05D000082 ORTHO05D008126 8.8e-06 54.3 86 31.4
Nitab4.5_0001829g0040 Nicotiana tabacum HOM05D000354 ORTHO05D000747 8.8e-06 54.3 46 50.0
Os11g0113900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 8.8e-06 54.3 65 36.9
Potri.001G159300 Populus trichocarpa HOM05D000440 ORTHO05D000295 8.8e-06 54.3 47 48.9
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 8.8e-06 54.3 77 39.0


User provided reference genes

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