Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 3.6e-94 348.2 172 100.0
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 1.0e-93 346.7 172 99.4
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 3.1e-85 318.5 167 95.2
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 3.1e-85 318.5 167 95.2
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 3.1e-85 318.5 167 95.2
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 3.1e-85 318.5 167 95.2
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 7.5e-84 313.9 170 90.6
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.4e-82 309.7 166 92.8
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 1.3e-80 303.1 165 90.9
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 5.6e-79 297.7 165 89.1
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 3.6e-78 295.0 169 85.8
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 3.4e-76 288.5 170 86.5
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 3.4e-76 288.5 161 90.1
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 7.5e-76 287.3 172 84.3
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 1.7e-75 286.2 166 84.9
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 3.7e-75 285.0 166 84.3
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 6.4e-75 284.3 153 92.2
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 6.4e-75 284.3 165 84.8
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 2.4e-74 282.3 172 83.1
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 6.8e-69 264.2 166 80.7
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 9.9e-68 260.4 149 79.2
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 4.1e-66 255.0 141 81.6
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 4.1e-66 255.0 152 76.3
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.4e-66 254.6 155 75.5
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.2e-65 253.4 141 80.9
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 6.0e-65 251.1 171 70.8
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 6.0e-65 251.1 156 73.7
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 6.0e-65 251.1 137 81.8
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 1.0e-64 250.4 159 71.7
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.0e-64 250.4 142 80.3
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.0e-64 250.4 139 79.9
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.7e-64 249.6 140 80.7
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.7e-64 249.6 151 76.2
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.7e-64 249.6 139 80.6
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 2.3e-64 249.2 142 80.3
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 2.3e-64 249.2 139 79.9
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 3.0e-64 248.8 138 80.4
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 3.9e-64 248.4 171 68.4
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 5.1e-64 248.1 141 80.1
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 6.6e-64 247.7 148 74.3
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 8.6e-64 247.3 201 66.7
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 8.6e-64 247.3 139 79.9
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 8.6e-64 247.3 139 79.9
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.1e-63 246.9 137 81.8
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.1e-63 246.9 163 70.6
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 1.1e-63 246.9 148 73.6
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.5e-63 246.5 139 79.1
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 1.9e-63 246.1 150 76.0
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 2.5e-63 245.7 136 81.6
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 2.5e-63 245.7 149 75.2
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 3.3e-63 245.4 150 76.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 3.3e-63 245.4 149 74.5
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 4.3e-63 245.0 159 71.1
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 5.6e-63 244.6 157 70.7
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 7.3e-63 244.2 157 71.3
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 9.6e-63 243.8 167 77.8
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 9.6e-63 243.8 137 79.6
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 9.6e-63 243.8 137 79.6
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 9.6e-63 243.8 157 73.2
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.6e-62 243.0 155 71.6
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 2.1e-62 242.7 150 72.7
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 2.8e-62 242.3 149 75.2
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 3.6e-62 241.9 139 77.7
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 6.2e-62 241.1 138 79.7
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 8.1e-62 240.7 152 70.4
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 8.1e-62 240.7 170 66.5
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 8.1e-62 240.7 138 81.2
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 8.1e-62 240.7 150 74.7
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 8.1e-62 240.7 150 74.0
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.1e-61 240.4 149 71.1
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 1.8e-61 239.6 170 66.5
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.4e-61 239.2 153 73.2
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.4e-61 239.2 153 72.5
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 2.4e-61 239.2 152 71.7
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 2.4e-61 239.2 152 73.0
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 4.0e-61 238.4 150 74.0
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 5.2e-61 238.0 148 70.3
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 5.2e-61 238.0 149 71.1
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 5.2e-61 238.0 136 80.1
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 6.9e-61 237.7 153 72.5
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 9.0e-61 237.3 149 73.2
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 9.0e-61 237.3 149 70.5
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 9.0e-61 237.3 149 69.8
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 1.2e-60 236.9 135 79.3
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 2.0e-60 236.1 134 78.4
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 2.0e-60 236.1 150 72.7
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 2.6e-60 235.7 152 71.1
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 3.4e-60 235.3 153 71.9
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 3.4e-60 235.3 149 73.2
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 3.4e-60 235.3 149 73.2
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 3.4e-60 235.3 149 73.2
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 4.4e-60 235.0 134 78.4
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 5.8e-60 234.6 170 66.5
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 9.9e-60 233.8 150 72.0
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.3e-59 233.4 158 69.6
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 1.3e-59 233.4 145 71.0
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 3.8e-59 231.9 146 71.9
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.4e-59 230.7 134 78.4
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 1.2e-57 226.9 157 65.0
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 2.1e-57 226.1 157 64.3
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 6.0e-57 224.6 162 65.4
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 2.3e-56 222.6 150 64.7
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 3.9e-56 221.9 169 62.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 2.5e-55 219.2 138 68.8
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 4.3e-55 218.4 141 70.9
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 7.3e-55 217.6 205 55.1
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.6e-54 216.5 200 55.5
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 2.1e-54 216.1 135 68.9
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 6.2e-54 214.5 161 61.5
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.1e-53 213.8 200 55.5
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 1.1e-53 213.8 131 73.3
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 5.3e-53 211.5 162 62.3
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 3.4e-52 208.8 118 83.1
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 2.1e-46 189.5 133 63.9
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 9.9e-44 180.6 138 64.5
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.3e-43 180.3 104 76.9
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 1.7e-43 179.9 136 57.4
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.4e-42 176.8 97 79.4
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.4e-34 150.2 86 75.6
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.1e-25 118.2 75 70.7
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-23 112.1 83 61.4
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 2.0e-15 86.7 78 52.6
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 5.7e-15 85.1 155 31.6
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.3e-11 73.9 138 31.2
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 8.2e-06 54.7 32 71.9


User provided reference genes

Program Settings