Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 0.0e+00 2374.4 1204 100.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 0.0e+00 2299.2 1195 97.5
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 0.0e+00 2240.3 1205 94.2
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 0.0e+00 2209.1 1206 93.2
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 0.0e+00 1913.3 1215 83.2
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.7e-238 830.5 623 74.0
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 6.6e-219 765.4 614 69.2
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 2.5e-218 763.5 633 69.4
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 9.5e-218 761.5 616 67.9
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 5.6e-202 709.1 617 66.0
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 7.6e-183 645.6 545 67.5
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.6e-180 637.9 647 58.1
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 3.3e-133 480.7 710 42.3
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.4e-128 465.3 1823 25.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-117 426.0 1564 27.0
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 6.2e-100 370.2 1749 24.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 6.2e-92 343.6 737 34.6
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 4.0e-91 340.9 690 36.1
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 2.0e-90 338.6 668 35.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.6e-90 338.2 654 35.0
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 4.4e-90 337.4 687 35.7
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.1e-88 332.8 673 36.8
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.9e-88 332.0 678 37.6
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.9e-88 332.0 699 34.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 7.9e-87 326.6 657 35.6
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 3.0e-86 324.7 695 34.5
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 6.6e-86 323.6 705 34.8
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 3.3e-85 321.2 669 35.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 5.6e-85 320.5 688 34.7
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.6e-84 318.9 639 36.3
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.6e-84 317.8 683 34.1
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 5.3e-83 313.9 720 34.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.2e-82 312.8 764 32.9
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 5.8e-82 310.5 634 36.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.3e-81 309.3 695 34.0
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.9e-81 308.1 757 34.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 6.4e-81 307.0 686 34.4
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.2e-80 304.7 636 35.8
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 7.1e-80 303.5 672 34.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 9.3e-80 303.1 668 36.2
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.6e-79 302.4 651 35.2
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.5e-79 301.2 662 36.1
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 6.0e-79 300.4 650 35.1
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.3e-77 294.7 650 33.7
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.3e-76 292.7 743 32.7
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.2e-76 290.4 657 33.3
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 2.4e-75 288.5 650 33.1
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-75 287.7 659 34.7
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-74 285.4 663 33.8
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 4.5e-74 284.3 766 30.9
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.7e-73 282.3 751 32.0
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.9e-73 281.6 736 31.9
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 6.5e-73 280.4 589 35.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 8.4e-73 280.0 660 33.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.1e-72 276.9 773 29.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.1e-72 276.9 778 29.3
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.1e-71 275.4 735 31.3
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.7e-71 275.0 642 32.4
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.8e-70 272.3 728 32.4
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.9e-70 271.2 712 31.6
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.1e-69 269.6 614 34.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.3e-68 266.2 787 30.6
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 2.8e-68 265.0 181 74.6
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 4.8e-68 264.2 958 26.3
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 1.1e-67 263.1 181 74.6
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.1e-67 261.2 746 31.2
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 3.4e-66 258.1 625 32.0
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.0e-65 256.5 181 73.5
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.3e-65 256.1 340 41.2
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 4.2e-64 251.1 838 28.0
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.2e-63 249.6 581 32.7
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 2.1e-63 248.8 303 43.9
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.7e-63 248.4 197 69.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.7e-63 248.4 306 44.1
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.1e-63 247.3 306 44.4
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-62 246.1 640 32.0
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.3e-62 246.1 562 34.2
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 3.9e-62 244.6 197 68.5
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.1e-62 244.2 206 64.6
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 8.7e-62 243.4 762 29.5
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.1e-61 243.0 790 28.1
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.1e-61 243.0 330 40.0
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.5e-61 241.9 309 40.8
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.5e-61 241.9 673 31.1
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.4e-61 240.4 327 41.6
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 2.2e-60 238.8 301 42.9
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.4e-59 236.1 297 43.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 5.3e-59 234.2 312 41.0
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 6.9e-59 233.8 162 74.1
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.4e-58 231.5 298 43.3
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 7.7e-58 230.3 586 31.7
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.1e-56 226.5 632 30.4
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.4e-56 223.4 312 43.3
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 4.6e-55 221.1 632 29.7
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.1e-53 216.5 300 40.0
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.3e-53 214.9 925 24.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.7e-53 214.2 294 40.1
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 7.4e-53 213.8 321 37.7
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 9.7e-53 213.4 683 27.8
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.7e-53 213.4 308 42.9
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.7e-52 212.6 929 25.4
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.7e-52 212.6 678 29.1
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-52 212.6 323 39.9
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.4e-51 209.5 678 29.1
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.2e-50 206.5 270 43.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.5e-50 206.1 688 29.2
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 4.2e-48 198.0 664 28.2
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.6e-47 196.1 264 40.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-47 195.7 302 37.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-47 195.3 337 35.0
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.0e-46 193.4 523 31.2
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.8e-46 192.6 303 37.6
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.8e-46 192.6 286 37.4
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.3e-46 192.2 297 37.7
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.6e-45 188.7 613 27.9
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 4.4e-45 188.0 307 38.4
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.7e-45 187.6 298 39.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-44 186.0 302 35.8
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 2.0e-42 179.1 316 42.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 4.5e-42 177.9 275 37.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.2e-41 175.6 261 42.1
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.2e-41 175.6 327 35.5
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.4e-40 170.2 660 26.7
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 5.7e-37 161.0 198 40.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.2e-36 159.1 403 34.5
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.2e-34 153.3 264 37.1
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.2e-33 149.1 220 40.9
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 2.9e-33 148.7 890 23.1
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.5e-32 145.6 528 28.6
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 7.2e-32 144.1 231 42.0
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.2e-32 144.1 247 35.6
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.7e-26 125.6 194 40.2
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.7e-25 122.9 196 37.2
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 1.9e-24 119.4 185 45.4
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.2e-23 116.7 269 30.1
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.0e-22 113.6 156 39.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-21 110.2 162 40.7
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-21 110.2 162 40.7
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.7e-20 106.3 158 38.6
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 9.2e-19 100.5 95 44.2
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.5e-18 98.6 185 37.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.3e-17 95.9 114 39.5
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 8.6e-17 94.0 180 35.6
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 8.0e-15 87.4 401 25.2
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-14 86.3 90 47.8
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 3.4e-13 82.0 304 27.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 3.7e-12 78.6 135 38.5
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.4e-12 77.8 134 35.8
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 8.3e-12 77.4 306 30.4
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 7.0e-11 74.3 129 34.1
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 2.0e-10 72.8 122 38.5
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.2e-07 61.2 85 40.0
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 8.0e-07 60.8 122 33.6
Sp1g04780 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.4e-06 60.1 45 68.9


User provided reference genes

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