Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p66660 Brassica napus HOM05D010829 ORTHO05D001770 4.7e-80 301.2 159 100.0
BraA09t42006Z Brassica rapa HOM05D010829 ORTHO05D001770 6.3e-77 290.8 159 95.0
C08p50890 Brassica napus HOM05D010829 ORTHO05D001770 4.2e-65 251.5 149 89.9
BolC8t52617H Brassica oleracea HOM05D010829 ORTHO05D001770 4.2e-65 251.5 149 89.9
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 1.8e-63 246.1 144 86.8
Thhalv10008904m.g Eutrema salsugineum HOM05D010829 ORTHO05D001770 5.6e-41 171.4 176 61.9
BcaC05g24659 Brassica carinata HOM05D010829 ORTHO05D001770 4.4e-38 161.8 165 61.8
C05p05040 Brassica napus HOM05D010829 ORTHO05D001770 4.4e-38 161.8 165 61.8
BolC5t29276H Brassica oleracea HOM05D010829 ORTHO05D001770 4.4e-38 161.8 165 61.8
A10p05470 Brassica napus HOM05D010829 ORTHO05D001770 1.3e-37 160.2 165 61.2
BraA10t42810Z Brassica rapa HOM05D010829 ORTHO05D001770 1.3e-37 160.2 165 61.2
BcaB02g06768 Brassica carinata HOM05D010829 ORTHO05D001770 1.4e-36 156.8 166 63.9
AL1G16960 Arabidopsis lyrata HOM05D010829 ORTHO05D001770 5.6e-33 144.8 172 60.5
Sp1g05650 Schrenkiella parvula HOM05D010829 ORTHO05D001770 2.8e-32 142.5 173 59.0
AT1G06930 Arabidopsis thaliana HOM05D010829 ORTHO05D001770 3.6e-32 142.1 169 59.2
CARHR006610 Cardamine hirsuta HOM05D010829 ORTHO05D001770 4.6e-27 125.2 165 54.5
Aa31LG1G7990 Aethionema arabicum HOM05D010829 ORTHO05D001770 1.7e-26 123.2 158 53.8
THA.LOC104800781 Tarenaya hassleriana HOM05D010829 ORTHO05D001770 3.3e-25 119.0 178 48.9
Carub.0001s0623 Capsella rubella HOM05D010829 ORTHO05D001770 1.2e-22 110.5 185 47.0
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 3.9e-10 68.9 170 34.7
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.6e-10 68.2 177 34.5
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 1.1e-09 67.4 124 39.5
Medtr5g075040 Medicago truncatula HOM05D002277 ORTHO05D001770 2.5e-09 66.2 69 50.7
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 4.3e-09 65.5 55 60.0
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 4.3e-09 65.5 75 52.0
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 4.3e-09 65.5 79 46.8
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 4.3e-09 65.5 115 39.1
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 5.6e-09 65.1 79 48.1
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.3e-08 63.9 67 50.7
Sabra13G0126000 Salix brachista HOM05D002277 ORTHO05D001770 1.3e-08 63.9 183 33.9
Psat2g051880 Pisum sativum HOM05D002277 ORTHO05D001770 1.6e-08 63.5 69 50.7
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 1.6e-08 63.5 120 42.5
Ciclev10002474m.g Citrus clementina HOM05D002277 ORTHO05D001770 2.1e-08 63.2 64 51.6
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.8e-08 62.8 75 49.3
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.8e-08 62.8 62 56.5
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 2.8e-08 62.8 77 49.4
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 2.8e-08 62.8 48 60.4
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 2.8e-08 62.8 100 41.0
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 3.6e-08 62.4 113 43.4
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.6e-08 62.4 91 44.0
CiPaw.14G052400 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.6e-08 62.4 181 35.9
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 3.6e-08 62.4 62 58.1
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.6e-08 62.4 58 55.2
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 3.6e-08 62.4 78 47.4
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 3.6e-08 62.4 78 43.6
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 3.6e-08 62.4 64 53.1
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.8e-08 62.0 71 47.9
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 4.8e-08 62.0 77 46.8
Potri.019G127400 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.8e-08 62.0 181 34.3
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 6.2e-08 61.6 76 52.6
Gorai.003G151900 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.2e-08 61.6 83 43.4
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 8.1e-08 61.2 64 53.1
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.1e-08 61.2 88 42.0
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.1e-08 61.2 75 49.3
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 1.1e-07 60.8 69 52.2
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.1e-07 60.8 106 49.1
Atru.chr1.2541 Acer truncatum HOM05D002277 ORTHO05D001770 1.4e-07 60.5 201 33.3
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.4e-07 60.5 42 64.3
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.4e-07 60.5 62 56.5
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.4e-07 60.5 73 53.4
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.4e-07 60.5 79 45.6
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 1.4e-07 60.5 65 50.8
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.4e-07 60.5 75 49.3
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.4e-07 60.5 70 50.0
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.8e-07 60.1 65 50.8
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.8e-07 60.1 54 61.1
Prupe.6G043800 Prunus persica HOM05D002277 ORTHO05D001770 1.8e-07 60.1 75 46.7
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 2.4e-07 59.7 74 50.0
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.4e-07 59.7 67 44.8
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 2.4e-07 59.7 80 45.0
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.4e-07 59.7 66 47.0
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.4e-07 59.7 79 45.6
RcHm_v2.0_Chr5g0072421 Rosa chinensis HOM05D002277 ORTHO05D001770 2.4e-07 59.7 77 48.1
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 2.4e-07 59.7 80 48.8
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.4e-07 59.7 75 48.0
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.1e-07 59.3 62 53.2
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.1e-07 59.3 64 51.6
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.1e-07 59.3 107 48.6
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.1e-07 59.3 107 48.6
TPR.G25757 Trifolium pratense HOM05D002277 ORTHO05D001770 3.1e-07 59.3 56 53.6
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 4.0e-07 58.9 66 50.0
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 4.0e-07 58.9 108 38.9
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.0e-07 58.9 65 49.2
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.0e-07 58.9 58 55.2
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.0e-07 58.9 58 55.2
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 4.0e-07 58.9 64 51.6
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 4.0e-07 58.9 41 65.9
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 4.0e-07 58.9 52 59.6
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 4.0e-07 58.9 112 40.2
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 5.3e-07 58.5 63 50.8
CANSAT54G0878 Cannabis sativa HOM05D002277 ORTHO05D001770 6.9e-07 58.2 42 66.7
Sed0018093 Sechium edule HOM05D002277 ORTHO05D001770 6.9e-07 58.2 156 39.1
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 9.0e-07 57.8 52 57.7
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.0e-07 57.8 107 48.6
LjContig00141g0024890 Lotus japonicus HOM05D002277 ORTHO05D001770 9.0e-07 57.8 78 43.6
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 9.0e-07 57.8 61 54.1
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 1.2e-06 57.4 71 47.9
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.2e-06 57.4 67 43.3
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.2e-06 57.4 38 73.7
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.2e-06 57.4 74 51.4
Eucgr.B04020 Eucalyptus grandis HOM05D002277 ORTHO05D001770 1.2e-06 57.4 44 63.6
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.2e-06 57.4 77 54.5
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 1.2e-06 57.4 66 48.5
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.5e-06 57.0 40 65.0
Lalb_Chr10g0103731 Lupinus albus HOM05D002277 ORTHO05D001770 1.5e-06 57.0 81 44.4
Lalb_Chr17g0345561 Lupinus albus HOM05D002277 ORTHO05D001770 1.5e-06 57.0 49 57.1
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 1.5e-06 57.0 55 56.4
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.0e-06 56.6 109 37.6
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 2.0e-06 56.6 78 43.6
CiPaw.13G065900 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.0e-06 56.6 177 35.0
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.0e-06 56.6 40 62.5
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.0e-06 56.6 73 52.1
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 2.0e-06 56.6 47 61.7
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 2.0e-06 56.6 49 61.2
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 2.0e-06 56.6 71 46.5
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 2.0e-06 56.6 74 41.9
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.6e-06 56.2 80 45.0
Phvul.008G249000 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 2.6e-06 56.2 73 47.9
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 2.6e-06 56.2 47 61.7
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.6e-06 56.2 67 47.8
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 2.6e-06 56.2 40 67.5
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 2.6e-06 56.2 79 45.6
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 3.4e-06 55.8 52 55.8
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 3.4e-06 55.8 39 69.2
Lj2P1099T14 Lonicera japonica HOM05D002277 ORTHO05D001770 3.4e-06 55.8 39 69.2
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 3.4e-06 55.8 55 56.4
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 3.4e-06 55.8 62 48.4
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 3.4e-06 55.8 65 55.4
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 3.4e-06 55.8 65 55.4
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 3.4e-06 55.8 78 46.2
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 3.4e-06 55.8 79 45.6
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 4.5e-06 55.5 42 59.5
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 4.5e-06 55.5 55 52.7
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 4.5e-06 55.5 64 48.4
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 4.5e-06 55.5 64 48.4
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 4.5e-06 55.5 64 48.4
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 4.5e-06 55.5 78 44.9
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.5 78 43.6
FAN11G2787 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.5 63 54.0
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.5 78 44.9
FAN16G0709 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.5 63 54.0
FAN21G1843 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.5 60 55.0
FAN25G3585 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.5 84 46.4
Hma1.2p1_2270F.1_g318540 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 4.5e-06 55.5 166 33.1
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 4.5e-06 55.5 64 45.3
SGA_v2.0_scaffold60G20916 Striga asiatica HOM05D002277 ORTHO05D001770 4.5e-06 55.5 78 43.6
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 4.5e-06 55.5 62 48.4
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 5.8e-06 55.1 124 31.5
BcaC07g39943 Brassica carinata HOM05D010959 ORTHO05D001770 5.8e-06 55.1 48 56.2
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 5.8e-06 55.1 48 56.2
C08p31590 Brassica napus HOM05D010959 ORTHO05D001770 5.8e-06 55.1 48 56.2
BolC8t50780H Brassica oleracea HOM05D010959 ORTHO05D001770 5.8e-06 55.1 48 56.2
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 5.8e-06 55.1 48 56.2
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 5.8e-06 55.1 53 49.1
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 5.8e-06 55.1 79 45.6
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 5.8e-06 55.1 80 43.8
Sabra19G0125500 Salix brachista HOM05D002277 ORTHO05D001770 5.8e-06 55.1 42 66.7
Sabra19G0129800 Salix brachista HOM05D002277 ORTHO05D001770 5.8e-06 55.1 42 66.7
Solyc06g050370.1 Solanum lycopersicum HOM05D002277 ORTHO05D001770 5.8e-06 55.1 78 44.9
ClCG03G000230 Citrullus lanatus HOM05D002277 ORTHO05D001770 7.6e-06 54.7 76 46.1
Glyma.09G277500 Glycine max HOM05D002277 ORTHO05D001770 7.6e-06 54.7 109 37.6
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.6e-06 54.7 65 49.2
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 7.6e-06 54.7 71 46.5
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 9.9e-06 54.3 40 62.5
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 9.9e-06 54.3 73 46.6
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 9.9e-06 54.3 38 68.4
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 9.9e-06 54.3 38 68.4
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 9.9e-06 54.3 38 68.4
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 9.9e-06 54.3 65 47.7
PGSC0003DMG400029071 Solanum tuberosum HOM05D002277 ORTHO05D001770 9.9e-06 54.3 72 44.4


User provided reference genes

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