Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p66480 Brassica napus HOM05D000311 ORTHO05D000183 4.7e-88 327.8 159 100.0
BraA09t41984Z Brassica rapa HOM05D000311 ORTHO05D000183 1.2e-46 190.3 92 95.7
BcaC07g42006 Brassica carinata HOM05D000311 ORTHO05D000183 3.4e-46 188.7 92 94.6
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 3.4e-46 188.7 92 94.6
Sp1g06140 Schrenkiella parvula HOM05D000311 ORTHO05D000183 1.7e-42 176.4 92 89.1
Carub.0001s0669 Capsella rubella HOM05D000311 ORTHO05D000183 4.4e-38 161.8 96 78.1
AL1G17550 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.3e-37 160.2 97 80.4
CARHR007100 Cardamine hirsuta HOM05D000311 ORTHO05D000183 5.4e-36 154.8 96 79.2
AT1G07390 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.2e-35 153.7 97 77.3
C08p50620 Brassica napus HOM05D000311 ORTHO05D000183 1.6e-24 116.7 100 60.0
BolC8t52590H Brassica oleracea HOM05D000311 ORTHO05D000183 8.1e-24 114.4 100 58.0
BcaC07g42463 Brassica carinata HOM05D000311 ORTHO05D000183 6.8e-23 111.3 96 58.3
A09p66460 Brassica napus HOM05D000311 ORTHO05D000183 2.6e-22 109.4 96 59.4
BcaC07g42003 Brassica carinata HOM05D000311 ORTHO05D000183 5.8e-22 108.2 97 56.7
A08p26590 Brassica napus HOM05D000311 ORTHO05D000183 1.7e-21 106.7 95 58.9
A09p66470 Brassica napus HOM05D000311 ORTHO05D000183 6.4e-21 104.8 96 56.2
BcaC07g42465 Brassica carinata HOM05D000311 ORTHO05D000183 1.1e-20 104.0 96 56.2
BcaC01g01647 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-20 103.6 84 60.7
BolC3t19637H Brassica oleracea HOM05D000311 ORTHO05D000183 1.4e-20 103.6 84 60.7
AL1G17540 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 3.2e-20 102.4 106 55.7
C03p73410 Brassica napus HOM05D000311 ORTHO05D000183 9.3e-20 100.9 84 59.5
CARHR182210 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.9e-18 95.5 95 52.6
CARHR006900 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.5e-17 93.6 96 52.1
BcaC07g42004 Brassica carinata HOM05D000311 ORTHO05D000183 4.3e-17 92.0 121 44.6
AL1G17310 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 3.1e-15 85.9 96 53.1
Sp1g29920 Schrenkiella parvula HOM05D000311 ORTHO05D000183 3.8e-13 79.0 106 43.4
CARHR185720 Cardamine hirsuta HOM05D000311 ORTHO05D000183 7.1e-12 74.7 75 52.0
CARHR183960 Cardamine hirsuta HOM05D000311 ORTHO05D000183 7.9e-11 71.2 94 40.4
CARHR050360 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.0e-10 70.9 94 41.5
HanXRQChr04g0097951 Helianthus annuus HOM05D000311 ORTHO05D000183 1.3e-10 70.5 69 47.8
BcaB05g24841 Brassica carinata HOM05D000311 ORTHO05D000183 1.7e-10 70.1 94 39.4
Manes.04G110457 Manihot esculenta HOM05D000311 ORTHO05D000183 2.3e-10 69.7 91 46.2
BcaC08g46822 Brassica carinata HOM05D000311 ORTHO05D000183 5.1e-10 68.6 94 40.4
A07p40040 Brassica napus HOM05D000311 ORTHO05D000183 5.1e-10 68.6 94 40.4
THA.LOC104800714 Tarenaya hassleriana HOM05D000311 ORTHO05D000183 5.1e-10 68.6 93 46.2
CARHR067460 Cardamine hirsuta HOM05D000311 ORTHO05D000183 8.7e-10 67.8 94 37.2
MBI14_g44094_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.1e-09 67.4 92 41.3
Thhalv10010101m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.5e-09 67.0 95 43.2
HanXRQChr04g0097921 Helianthus annuus HOM05D000311 ORTHO05D000183 1.5e-09 67.0 92 44.6
AT2G25470 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.9e-09 66.6 97 39.2
BolC6t39868H Brassica oleracea HOM05D000311 ORTHO05D000183 1.9e-09 66.6 94 39.4
Manes.04G110527 Manihot esculenta HOM05D000311 ORTHO05D000183 1.9e-09 66.6 91 44.0
Manes.04G110518 Manihot esculenta HOM05D000311 ORTHO05D000183 2.5e-09 66.2 82 47.6
AL2G34080 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 3.3e-09 65.9 94 37.2
AT1G74180 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 3.3e-09 65.9 97 39.2
BcaC05g24569 Brassica carinata HOM05D000311 ORTHO05D000183 4.3e-09 65.5 88 44.3
A07p40030 Brassica napus HOM05D000311 ORTHO05D000183 4.3e-09 65.5 98 37.8
BraA02t06964Z Brassica rapa HOM05D000311 ORTHO05D000183 4.3e-09 65.5 97 41.2
Carub.0004s0513 Capsella rubella HOM05D000311 ORTHO05D000183 4.3e-09 65.5 97 39.2
BcaC08g45603 Brassica carinata HOM05D000311 ORTHO05D000183 9.6e-09 64.3 96 38.5
BolC6t38467H Brassica oleracea HOM05D000311 ORTHO05D000183 9.6e-09 64.3 94 37.2
Hma1.2p1_0017F.1_g011340 Hydrangea macrophylla HOM05D000311 ORTHO05D000183 9.6e-09 64.3 87 40.2
CARHR220400 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.3e-08 63.9 94 39.4
MBI14_g38253_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.3e-08 63.9 77 42.9
TPR.G18374 Trifolium pratense HOM05D000311 ORTHO05D000183 1.3e-08 63.9 79 40.5
BcaC08g45607 Brassica carinata HOM05D000311 ORTHO05D000183 1.6e-08 63.5 98 38.8
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 1.6e-08 63.5 94 37.2
Medtr4g016790 Medicago truncatula HOM05D000311 ORTHO05D000183 1.6e-08 63.5 72 45.8
Lsat_1_v5_gn_0_21080 Lactuca sativa HOM05D000311 ORTHO05D000183 2.1e-08 63.2 98 39.8
TPR.G31003 Trifolium pratense HOM05D000311 ORTHO05D000183 2.8e-08 62.8 73 41.1
GSVIVG01013974001 Vitis vinifera HOM05D000311 ORTHO05D000183 2.8e-08 62.8 95 38.9
AL4G16880 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 3.6e-08 62.4 97 38.1
BcaC05g24568 Brassica carinata HOM05D000311 ORTHO05D000183 3.6e-08 62.4 90 37.8
Ciclev10027016m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.6e-08 62.4 94 38.3
AT1G74190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 4.8e-08 62.0 90 37.8
CsaV3_7G032220 Cucumis sativus L. HOM05D000311 ORTHO05D000183 4.8e-08 62.0 102 34.3
Medtr4g016850 Medicago truncatula HOM05D000311 ORTHO05D000183 4.8e-08 62.0 82 39.0
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.8e-08 62.0 89 38.2
C02p31730 Brassica napus HOM05D000311 ORTHO05D000183 6.2e-08 61.6 97 40.2
BolC2t09201H Brassica oleracea HOM05D000311 ORTHO05D000183 6.2e-08 61.6 97 40.2
CARHR115410 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.2e-08 61.6 92 37.0
BcaC08g45538 Brassica carinata HOM05D000311 ORTHO05D000183 8.1e-08 61.2 100 39.0
C06p32150 Brassica napus HOM05D000311 ORTHO05D000183 8.1e-08 61.2 100 39.0
BolC6t38339H Brassica oleracea HOM05D000311 ORTHO05D000183 8.1e-08 61.2 100 39.0
Lsat_1_v5_gn_1_29741 Lactuca sativa HOM05D000311 ORTHO05D000183 8.1e-08 61.2 106 40.6
CARHR060140 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.1e-07 60.8 81 40.7
Hma1.2p1_0017F.1_g011390 Hydrangea macrophylla HOM05D000311 ORTHO05D000183 1.1e-07 60.8 90 38.9
TPR.G27434 Trifolium pratense HOM05D000311 ORTHO05D000183 1.1e-07 60.8 74 40.5
AT5G49290 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.4e-07 60.5 94 37.2
BcaB05g24838 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-07 60.5 98 38.8
CARHR067450 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.4e-07 60.5 85 40.0
A02p19140 Brassica napus HOM05D000311 ORTHO05D000183 1.8e-07 60.1 125 35.2
CARHR067340 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.8e-07 60.1 97 37.1
BcaB01g03008 Brassica carinata HOM05D000311 ORTHO05D000183 2.4e-07 59.7 113 31.9
BcaC03g15487 Brassica carinata HOM05D000311 ORTHO05D000183 2.4e-07 59.7 97 39.2
Duzib190G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 2.4e-07 59.7 69 44.9
Medtr4g015930 Medicago truncatula HOM05D000311 ORTHO05D000183 2.4e-07 59.7 89 39.3
BcaB02g07056 Brassica carinata HOM05D000311 ORTHO05D000183 3.1e-07 59.3 100 38.0
BraA07t31544Z Brassica rapa HOM05D000311 ORTHO05D000183 3.1e-07 59.3 94 36.2
CARHR053860 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.1e-07 59.3 86 43.0
A07p21470 Brassica napus HOM05D000311 ORTHO05D000183 4.0e-07 58.9 94 38.3
C06p21070 Brassica napus HOM05D000311 ORTHO05D000183 4.0e-07 58.9 94 38.3
BolC6t37292H Brassica oleracea HOM05D000311 ORTHO05D000183 4.0e-07 58.9 94 38.3
BraA07t29834Z Brassica rapa HOM05D000311 ORTHO05D000183 4.0e-07 58.9 94 38.3
Carub.0002s0642 Capsella rubella HOM05D000311 ORTHO05D000183 4.0e-07 58.9 71 47.9
CARHR163040 Cardamine hirsuta HOM05D000311 ORTHO05D000183 4.0e-07 58.9 93 40.9
Sed0025985 Sechium edule HOM05D000311 ORTHO05D000183 4.0e-07 58.9 71 40.8
BcaB01g05211 Brassica carinata HOM05D001733 ORTHO05D000183 5.3e-07 58.5 86 38.4
Thhalv10018082m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 5.3e-07 58.5 94 40.4
Sed0004993 Sechium edule HOM05D000311 ORTHO05D000183 5.3e-07 58.5 87 40.2
Duzib160G0191 Durio zibethinus HOM05D000311 ORTHO05D000183 6.9e-07 58.2 83 43.4
BcaC08g46821 Brassica carinata HOM05D000311 ORTHO05D000183 9.0e-07 57.8 98 35.7
C04p51900 Brassica napus HOM05D000311 ORTHO05D000183 9.0e-07 57.8 96 38.5
C06p48340 Brassica napus HOM05D000311 ORTHO05D000183 9.0e-07 57.8 98 35.7
COL.COLO4_11857 Corchorus olitorius HOM05D000311 ORTHO05D000183 9.0e-07 57.8 83 43.4
MBI18_g29265_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 9.0e-07 57.8 96 35.4
Medtr8g077110 Medicago truncatula HOM05D000311 ORTHO05D000183 9.0e-07 57.8 92 35.9
TAR636G1126 Trochodendron aralioides HOM05D000311 ORTHO05D000183 9.0e-07 57.8 78 44.9
BraA07t30499Z Brassica rapa HOM05D000311 ORTHO05D000183 1.2e-06 57.4 99 37.4
COL.COLO4_11893 Corchorus olitorius HOM05D000311 ORTHO05D000183 1.2e-06 57.4 75 42.7
Thhalv10018074m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.2e-06 57.4 88 36.4
TPR.G31998 Trifolium pratense HOM05D000311 ORTHO05D000183 1.5e-06 57.0 61 42.6
Medtr4g016810 Medicago truncatula HOM05D000311 ORTHO05D000183 2.0e-06 56.6 93 37.6
AL5G34150 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 2.6e-06 56.2 93 36.6
arahy.Tifrunner.gnm1.ann1.PC6LAR Arachis hypogaea HOM05D000311 ORTHO05D000183 2.6e-06 56.2 74 47.3
C03p09630 Brassica napus HOM05D000311 ORTHO05D000183 2.6e-06 56.2 86 37.2
Thhalv10019030m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 2.6e-06 56.2 93 33.3
QL05p012854 Quercus lobata HOM05D000311 ORTHO05D000183 2.6e-06 56.2 73 39.7
QL05p014144 Quercus lobata HOM05D000311 ORTHO05D000183 2.6e-06 56.2 97 33.0
TPR.G175 Trifolium pratense HOM05D000311 ORTHO05D000183 2.6e-06 56.2 75 37.3
Zm00001eb112120 Zea mays HOM05D000782 ORTHO05D018830 2.6e-06 56.2 68 42.6
A06p14740 Brassica napus HOM05D000311 ORTHO05D000183 3.4e-06 55.8 76 44.7
C06p48310 Brassica napus HOM05D000311 ORTHO05D000183 3.4e-06 55.8 90 35.6
BraA06t24597Z Brassica rapa HOM05D000311 ORTHO05D000183 3.4e-06 55.8 76 44.7
Carub.0004s0515 Capsella rubella HOM05D000311 ORTHO05D000183 3.4e-06 55.8 102 36.3
Oeu010079.1 Olea europaea HOM05D000311 ORTHO05D000183 3.4e-06 55.8 74 43.2
Sed0023420 Sechium edule HOM05D000311 ORTHO05D000183 3.4e-06 55.8 71 40.8
Lsat_1_v5_gn_1_29661 Lactuca sativa HOM05D000311 ORTHO05D000183 4.5e-06 55.5 101 39.6
Medtr4g016870 Medicago truncatula HOM05D000311 ORTHO05D000183 4.5e-06 55.5 72 41.7
Atru.chr12.2416 Acer truncatum HOM05D000311 ORTHO05D000183 5.8e-06 55.1 80 38.8
Lsat_1_v5_gn_1_31461 Lactuca sativa HOM05D000311 ORTHO05D000183 5.8e-06 55.1 98 36.7
QL05p014014 Quercus lobata HOM05D000311 ORTHO05D000183 5.8e-06 55.1 97 33.0
arahy.Tifrunner.gnm1.ann1.UG8EST Arachis hypogaea HOM05D000311 ORTHO05D000183 7.6e-06 54.7 82 42.7
BcaB07g31881 Brassica carinata HOM05D000311 ORTHO05D000183 7.6e-06 54.7 76 43.4
BolC3t13452H Brassica oleracea HOM05D000311 ORTHO05D000183 7.6e-06 54.7 86 37.2
CARHR019250 Cardamine hirsuta HOM05D000311 ORTHO05D000183 7.6e-06 54.7 82 35.4
TPR.G29355 Trifolium pratense HOM05D000311 ORTHO05D000183 7.6e-06 54.7 71 38.0
AT1G58190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 9.9e-06 54.3 68 44.1
arahy.Tifrunner.gnm1.ann1.RU3E03 Arachis hypogaea HOM05D000311 ORTHO05D000183 9.9e-06 54.3 82 42.7
Duzib160G0087 Durio zibethinus HOM05D000311 ORTHO05D000183 9.9e-06 54.3 83 41.0
Nn2g15993 Nelumbo nucifera HOM05D000311 ORTHO05D000183 9.9e-06 54.3 80 42.5
Sopen08g021730 Solanum pennellii HOM05D000053 ORTHO05D000035 9.9e-06 54.3 67 46.3


User provided reference genes

Program Settings