Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 3.6e-285 984.2 479 100.0
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.8e-284 979.9 479 99.6
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 4.0e-276 954.1 479 96.7
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 4.0e-276 954.1 479 96.7
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 4.0e-276 954.1 479 96.7
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.4e-260 901.7 487 90.6
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 4.0e-260 901.0 489 90.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 5.4e-257 890.6 488 89.1
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.4e-257 890.6 488 89.3
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.0e-255 886.3 489 88.5
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 5.1e-255 884.0 488 88.3
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-254 882.9 488 88.3
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 2.1e-253 878.6 488 87.9
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 3.6e-253 877.9 488 87.9
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.8e-252 875.5 483 88.4
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 6.4e-250 867.1 470 89.6
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 6.9e-236 820.5 485 82.7
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 8.7e-223 776.9 425 89.4
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.8e-218 761.5 485 77.7
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.1e-212 741.5 466 76.8
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.5e-193 679.9 468 68.2
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.6e-192 676.4 486 66.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 6.8e-191 671.0 449 69.0
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 8.8e-191 670.6 485 65.8
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 7.5e-190 667.5 493 64.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 8.3e-189 664.1 471 66.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.4e-188 662.5 497 64.6
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.1e-188 662.1 469 67.2
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.1e-188 661.8 487 64.7
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 9.1e-188 660.6 465 66.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.7e-187 659.1 474 65.6
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.5e-187 658.7 487 64.7
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.5e-187 658.3 487 64.5
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 4.5e-187 658.3 462 66.7
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 7.7e-187 657.5 467 66.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 2.2e-186 656.0 493 63.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.2e-186 656.0 469 66.1
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.5e-186 654.4 480 65.6
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.5e-186 654.4 480 65.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-185 653.7 465 65.6
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 3.2e-185 652.1 481 63.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.2e-185 652.1 480 65.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.2e-185 651.7 480 65.4
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 7.2e-185 651.0 465 65.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.2e-184 650.2 480 65.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.1e-184 649.4 486 63.8
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.1e-184 649.4 489 62.4
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.1e-184 649.4 465 65.8
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.7e-184 649.0 475 63.8
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.7e-184 649.0 479 64.1
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 8.0e-184 647.5 494 63.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.4e-183 646.7 465 66.0
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.8e-183 646.4 465 64.5
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 2.3e-183 646.0 463 64.1
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 3.0e-183 645.6 486 62.8
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 3.0e-183 645.6 461 66.4
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 5.2e-183 644.8 475 64.2
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 5.2e-183 644.8 468 66.0
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 6.8e-183 644.4 486 62.3
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 6.8e-183 644.4 449 66.4
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.2e-182 643.7 478 64.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.5e-182 643.3 472 65.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.5e-182 643.3 445 66.5
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.5e-182 641.0 468 64.7
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 7.5e-182 641.0 481 64.4
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.7e-181 639.8 462 65.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.7e-181 639.8 449 65.9
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.2e-181 639.4 469 63.5
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.9e-181 638.3 439 69.0
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 4.9e-181 638.3 478 63.0
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 5.4e-180 634.8 460 64.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 7.0e-180 634.4 490 63.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.2e-179 633.6 475 63.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.6e-179 633.3 475 63.2
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.0e-179 632.9 480 62.5
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.7e-179 632.5 455 65.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.7e-179 632.5 475 62.9
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.9e-179 631.3 521 60.1
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 5.9e-179 631.3 492 61.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 7.7e-179 630.9 488 61.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.0e-178 630.6 466 63.5
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.3e-178 629.4 470 63.4
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.9e-178 629.0 517 60.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 3.8e-178 628.6 469 63.5
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 6.6e-178 627.9 469 63.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.5e-177 626.7 455 65.7
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.3e-177 625.5 492 60.2
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 5.5e-177 624.8 430 68.4
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 5.5e-177 624.8 460 64.3
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.5e-177 624.0 464 63.8
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.2e-176 623.6 487 61.0
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.6e-176 623.2 469 63.1
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 4.7e-176 621.7 478 61.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 8.0e-176 620.9 452 64.4
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 3.0e-175 619.0 467 64.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 6.8e-175 617.8 480 61.9
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 6.8e-175 617.8 476 62.0
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.4e-174 615.1 458 63.3
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.5e-174 614.4 451 63.9
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.3e-173 613.6 464 61.2
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.3e-173 613.6 460 63.7
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.8e-172 609.8 458 63.8
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 3.2e-172 609.0 467 62.3
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.2e-171 607.1 424 66.7
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.6e-171 606.7 514 57.2
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 5.0e-170 601.7 529 57.3
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 4.3e-169 598.6 479 61.2
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.3e-169 598.6 585 52.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.6e-168 595.5 459 61.2
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.6e-168 595.5 452 63.9
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.1e-167 592.4 481 59.0
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.9e-167 590.9 417 65.7
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 3.4e-166 589.0 452 60.8
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 5.8e-166 588.2 477 61.4
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 7.5e-166 587.8 430 65.8
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.2e-165 586.3 436 65.4
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 2.2e-165 586.3 467 59.3
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.1e-164 582.0 486 58.6
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 5.4e-164 581.6 475 59.4
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.7e-163 579.3 474 62.2
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.3e-162 576.2 624 48.4
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.5e-161 573.5 463 58.1
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.9e-161 573.2 545 53.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.9e-161 573.2 394 67.0
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-161 571.6 379 68.9
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 5.6e-161 571.6 454 61.2
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.8e-159 566.6 475 58.7
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.8e-159 564.7 477 61.0
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 6.4e-157 558.1 441 60.8
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.4e-156 557.0 440 59.8
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 2.4e-156 556.2 489 56.9
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.5e-155 552.4 437 62.2
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 8.4e-149 531.2 415 62.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.1e-140 501.5 463 55.7
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 9.9e-134 481.1 477 51.2
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.2e-133 479.9 475 49.9
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 2.3e-130 469.9 448 51.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.8e-128 463.0 441 53.1
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.8e-126 455.3 377 59.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.1e-124 451.1 335 65.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 7.9e-123 444.9 457 47.9
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 9.3e-116 421.4 399 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.0e-109 401.4 514 43.0
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.4e-103 380.9 300 60.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.7e-98 362.1 265 65.7
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 8.5e-77 292.0 297 50.5
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.5e-73 281.2 201 62.7
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.6e-67 260.0 204 63.2
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 5.2e-50 203.0 208 50.5
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 6.0e-46 189.5 151 59.6
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 6.4e-40 169.5 301 34.9
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 5.1e-37 159.8 101 71.3
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.9e-36 157.9 431 29.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.9e-36 157.9 117 63.2
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.1e-31 140.2 148 51.4
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 8.6e-29 132.5 116 57.8
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-28 131.7 114 57.9
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-27 128.6 105 60.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.2e-24 117.9 86 62.8
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.8e-24 117.1 75 70.7
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 5.4e-23 113.2 96 55.2
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.1e-22 111.3 70 82.9
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-18 99.0 66 63.6
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.5e-17 95.1 71 59.2
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.2e-16 91.3 110 47.3
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.1e-14 84.7 62 61.3
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 9.0e-10 69.3 48 60.4
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.4e-09 67.4 45 62.2
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.9e-08 64.3 39 74.4
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 1.2e-06 58.9 49 53.1
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.6e-06 58.5 49 53.1


User provided reference genes

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