Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 3.4e-200 701.4 351 100.0
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 9.7e-187 656.8 350 95.7
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 2.2e-186 655.6 350 95.4
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.8e-186 655.2 350 95.4
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 3.1e-185 651.7 350 94.9
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 3.1e-185 651.7 350 94.9
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 4.1e-185 651.4 351 94.3
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-184 649.8 351 94.0
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 2.6e-184 648.7 351 93.7
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 3.4e-184 648.3 351 93.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 4.5e-184 647.9 350 93.7
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 4.5e-184 647.9 350 94.0
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 5.9e-184 647.5 351 93.4
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.2e-183 645.6 351 93.4
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.9e-183 645.2 351 92.6
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 3.8e-183 644.8 344 95.3
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 5.0e-183 644.4 351 93.2
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 5.0e-183 644.4 351 93.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 6.5e-183 644.0 351 93.2
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.1e-182 643.3 350 93.4
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.9e-182 642.5 351 93.4
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 2.6e-176 622.1 319 97.8
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.1e-174 616.7 351 89.2
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.5e-174 614.4 351 88.9
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 6.1e-173 610.9 361 87.8
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.5e-163 579.7 351 82.6
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.6e-163 578.9 350 82.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.7e-163 577.8 350 80.6
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 9.7e-163 577.0 350 82.3
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.3e-162 576.6 348 81.6
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.7e-162 576.2 350 81.1
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.2e-162 575.9 351 81.8
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.8e-162 575.5 351 80.9
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.7e-162 575.1 351 80.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 4.8e-162 574.7 348 81.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 4.8e-162 574.7 351 81.2
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 8.2e-162 573.9 349 81.9
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.2e-162 573.9 350 79.4
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-161 573.5 348 80.7
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.8e-161 572.8 347 81.8
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.8e-161 572.8 350 80.9
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.4e-161 572.4 349 81.1
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 2.4e-161 572.4 351 80.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.1e-161 572.0 349 81.4
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.1e-161 571.6 348 80.7
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 5.3e-161 571.2 348 81.0
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 5.3e-161 571.2 350 80.6
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.3e-161 571.2 348 81.0
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 7.0e-161 570.9 351 80.3
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.2e-160 570.1 348 80.7
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.6e-160 569.7 348 81.6
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.6e-160 569.7 351 80.6
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.6e-160 569.7 349 81.1
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 2.0e-160 569.3 351 80.1
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 3.5e-160 568.5 347 81.6
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 5.9e-160 567.8 351 79.8
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 5.9e-160 567.8 349 80.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 5.9e-160 567.8 350 80.0
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 7.7e-160 567.4 348 80.7
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.0e-159 567.0 351 79.8
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.3e-159 566.6 351 80.3
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.3e-159 566.6 348 81.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.7e-159 566.2 351 79.2
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.7e-159 566.2 351 79.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.2e-159 565.8 348 81.3
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.9e-159 565.5 351 80.1
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.9e-159 565.5 353 80.5
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-159 565.5 353 80.5
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-159 565.5 353 80.5
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.9e-159 565.5 348 80.5
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 5.0e-159 564.7 351 79.5
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 5.0e-159 564.7 351 79.5
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 5.0e-159 564.7 351 79.5
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 5.0e-159 564.7 351 80.1
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 5.0e-159 564.7 348 81.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 6.5e-159 564.3 351 78.9
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 8.5e-159 563.9 351 79.8
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.1e-158 563.5 351 79.5
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.1e-158 563.5 351 79.5
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.5e-158 563.1 351 79.8
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.5e-158 563.1 350 79.7
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.5e-158 563.1 351 79.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.9e-158 562.8 351 79.5
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.5e-158 562.4 349 79.4
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.5e-158 562.4 351 78.6
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 3.2e-158 562.0 351 80.1
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 4.2e-158 561.6 349 79.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 5.5e-158 561.2 349 79.4
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.2e-158 560.8 353 79.6
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 7.2e-158 560.8 348 80.5
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.4e-158 560.5 354 79.7
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.2e-157 560.1 349 79.7
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.1e-157 559.3 351 78.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 2.7e-157 558.9 351 78.3
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.7e-157 558.9 350 79.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.7e-157 558.1 351 78.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-156 556.6 348 80.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.8e-156 556.2 350 79.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.3e-156 555.8 351 77.8
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.0e-156 555.4 348 80.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 6.7e-156 554.3 351 78.3
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.5e-155 553.1 351 78.6
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.6e-155 552.4 317 84.9
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.7e-154 549.7 314 85.7
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.7e-154 548.5 319 83.7
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 6.3e-154 547.7 370 75.7
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.4e-153 545.8 319 83.4
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.1e-153 545.4 350 76.3
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.5e-152 542.0 350 77.4
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-151 540.0 319 83.4
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.1e-150 537.0 318 81.8
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.9e-150 536.2 319 81.8
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.9e-150 536.2 393 70.0
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.5e-150 535.8 324 80.9
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 7.2e-150 534.3 324 80.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 2.3e-148 529.3 349 75.6
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.2e-148 528.1 350 74.3
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 2.0e-147 526.2 351 76.4
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.2e-146 522.7 348 75.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.2e-144 516.9 348 72.7
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.0e-143 513.8 352 71.3
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.1e-142 510.4 351 74.4
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.5e-142 509.2 353 71.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.1e-141 506.1 350 71.4
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.3e-140 502.7 350 70.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.7e-138 496.5 394 67.0
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.5e-136 488.4 436 61.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.1e-133 479.6 292 80.5
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 6.4e-130 468.0 286 81.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.1e-129 467.2 331 69.2
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-126 456.8 265 84.5
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-126 456.8 265 84.5
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.9e-126 456.4 265 84.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.8e-124 449.9 350 68.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 5.1e-119 431.8 351 65.8
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.3e-118 427.9 351 65.2
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.6e-117 425.6 359 61.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 4.1e-113 412.1 231 87.0
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 7.8e-112 407.9 344 58.4
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 2.1e-109 399.8 266 74.4
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.7e-106 390.2 266 74.1
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.0e-104 381.7 242 77.3
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.1e-102 377.5 326 60.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 6.0e-96 355.1 231 75.3
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.3e-95 353.2 310 56.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 9.1e-52 208.4 128 78.9
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.2e-41 173.3 175 56.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.2e-34 150.6 179 53.1
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.5e-27 126.7 79 74.7
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.7e-26 124.4 74 81.1
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 72 79.2
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 4.2e-25 119.8 79 72.2
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 5.0e-18 96.3 77 61.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 3.1e-15 87.0 51 82.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 6.4e-13 79.3 99 47.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 6.0e-11 72.8 57 66.7
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.3e-10 71.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.5e-09 68.2 100 43.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.4e-07 61.6 60 55.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.4e-07 61.6 60 55.0


User provided reference genes

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