Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.4e-248 862.4 431 100.0
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.0e-246 856.3 431 99.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.1e-245 852.8 431 98.4
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.1e-245 852.8 431 98.4
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.2e-224 781.2 429 88.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 6.2e-212 740.7 427 85.7
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 2.1e-207 725.7 419 85.2
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 6.0e-207 724.2 419 85.0
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 7.7e-202 707.2 419 82.6
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.3e-201 706.4 419 82.3
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 3.2e-192 675.2 420 79.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.2e-177 625.9 421 75.1
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.9e-168 596.3 420 71.4
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.0e-166 589.0 420 68.3
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 7.5e-165 584.3 420 68.1
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.1e-163 580.5 420 67.6
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.4e-163 579.3 420 67.1
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.4e-163 579.3 420 66.9
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 4.1e-163 578.6 420 67.4
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 9.1e-163 577.4 420 66.9
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 9.1e-163 577.4 420 66.9
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 3.5e-162 575.5 420 66.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 7.7e-162 574.3 420 67.4
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.5e-160 570.1 420 66.0
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.5e-160 569.3 420 66.0
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.5e-160 569.3 420 66.2
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.5e-160 569.3 420 66.9
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 5.5e-160 568.2 420 66.9
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.2e-159 567.0 420 66.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.6e-159 566.6 421 66.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-159 566.2 421 66.5
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.1e-159 566.2 420 66.4
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 2.8e-159 565.8 420 66.0
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.8e-158 563.1 429 63.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 3.0e-158 562.4 419 66.8
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 5.2e-158 561.6 429 64.1
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 6.8e-158 561.2 420 66.0
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 6.8e-158 561.2 420 66.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.2e-157 560.5 420 65.2
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.6e-157 559.3 420 65.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 7.5e-157 557.8 420 66.0
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 7.5e-157 557.8 420 64.8
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.2e-156 556.2 421 65.3
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.8e-156 555.8 420 64.5
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 2.8e-156 555.8 420 65.5
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.9e-156 555.1 420 65.0
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 4.9e-156 555.1 425 64.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 6.3e-156 554.7 420 64.8
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 8.3e-156 554.3 420 66.7
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 8.3e-156 554.3 420 65.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.3e-156 554.3 420 65.0
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.8e-155 553.1 420 64.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.8e-155 553.1 420 64.3
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.4e-155 552.7 420 64.8
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 4.1e-155 552.0 420 66.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 7.0e-155 551.2 420 65.5
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 7.0e-155 551.2 421 65.1
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 7.0e-155 551.2 420 64.8
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.2e-154 550.4 420 64.5
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.5e-154 548.9 420 64.3
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.5e-154 548.9 420 65.2
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.0e-153 547.4 420 63.6
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.3e-153 547.0 420 63.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.3e-153 547.0 421 62.7
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.9e-153 545.4 420 63.8
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 5.0e-153 545.0 420 64.5
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 8.6e-153 544.3 419 63.2
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.1e-152 543.9 427 62.3
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.9e-152 543.1 410 65.9
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 3.3e-152 542.3 420 64.0
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 4.3e-152 542.0 421 63.4
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 5.6e-152 541.6 420 63.8
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.6e-151 540.0 421 62.9
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.1e-151 539.7 420 64.3
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.0e-150 537.3 420 61.9
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.4e-150 537.0 420 63.1
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 5.8e-149 531.6 425 61.9
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 5.8e-149 531.6 420 62.1
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 5.8e-149 531.6 430 60.7
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 7.5e-149 531.2 421 62.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.2e-148 529.6 420 61.7
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.9e-148 528.5 420 61.4
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.1e-147 527.3 420 61.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.4e-147 526.9 420 60.5
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.4e-147 526.9 405 63.0
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 2.4e-147 526.2 420 61.9
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 4.1e-147 525.4 425 60.5
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.4e-147 525.0 425 60.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 6.0e-146 521.5 423 61.7
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.7e-145 520.0 420 61.4
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 3.0e-145 519.2 407 61.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.0e-145 519.2 408 62.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 5.0e-145 518.5 420 60.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 6.6e-145 518.1 425 60.7
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.3e-142 509.6 423 61.2
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 6.8e-142 508.1 424 61.1
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 9.8e-141 504.2 421 61.0
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 3.7e-140 502.3 422 60.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.7e-140 502.3 420 60.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.9e-140 501.9 421 61.8
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 8.3e-140 501.1 420 59.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.8e-134 483.4 420 58.3
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.1e-134 482.6 377 62.9
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.6e-133 479.6 420 57.4
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 7.5e-133 478.0 420 56.7
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.7e-132 476.9 421 56.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 7.1e-131 471.5 421 59.6
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.2e-130 470.7 420 55.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 3.9e-129 465.7 422 57.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.5e-128 463.0 421 57.5
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.1e-126 457.6 421 57.2
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 9.2e-123 444.5 422 53.3
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.0e-121 439.5 425 52.9
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 5.1e-113 412.1 425 50.8
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 8.7e-113 411.4 405 51.6
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.6e-111 407.1 357 59.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 3.1e-110 402.9 425 49.9
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.2e-98 364.4 422 46.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 3.0e-97 359.8 251 68.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.0e-97 359.8 407 44.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.3e-95 354.4 282 61.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.2e-92 343.6 400 47.5
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 3.6e-82 309.7 405 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.4e-81 307.8 359 44.0
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-78 298.1 303 54.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 6.5e-76 288.9 298 50.7
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 9.7e-72 275.0 256 52.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 4.2e-59 233.0 316 39.2
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.4e-56 223.4 160 73.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.7e-55 219.9 266 47.4
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 4.0e-49 199.9 134 68.7
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.4e-38 164.1 131 60.3
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-32 145.2 99 71.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-30 136.7 91 72.5
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-22 110.2 74 70.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 9.2e-22 109.0 71 71.8
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-20 104.0 71 70.4
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-19 102.1 79 60.8
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-19 100.1 71 69.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-19 100.1 71 69.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.1e-17 95.5 96 53.1
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 6.2e-10 69.7 419 23.4
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 2.0e-08 64.7 340 24.7
MD17G1089600 Malus domestica HOM05D008065 ORTHO05D010197 5.8e-08 63.2 306 24.8
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 7.6e-08 62.8 239 26.8
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 7.6e-08 62.8 239 26.8
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.0 239 26.8
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 2.2e-07 61.2 300 25.0
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 3.8e-07 60.5 229 27.9
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 4.9e-07 60.1 215 29.3
RcHm_v2.0_Chr5g0028241 Rosa chinensis HOM05D000051 ORTHO05D000015 8.4e-07 59.3 429 23.3
PGSC0003DMG400037653 Solanum tuberosum HOM05D001396 ORTHO05D000493 8.4e-07 59.3 237 25.7
BcaB03g15699 Brassica carinata HOM05D002909 ORTHO05D000493 1.4e-06 58.5 231 24.7
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-06 57.8 237 26.6
CAN.G535.4 Capsicum annuum HOM05D001396 ORTHO05D000493 3.2e-06 57.4 239 26.4
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 3.2e-06 57.4 305 24.9
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 4.2e-06 57.0 247 24.7
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 5.4e-06 56.6 318 24.8
BolC3t14007H Brassica oleracea HOM05D000051 ORTHO05D000015 7.1e-06 56.2 240 25.4
Thhalv10015365m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 7.1e-06 56.2 240 25.0
Aa31LG7G1360 Aethionema arabicum HOM05D000051 ORTHO05D000015 9.3e-06 55.8 242 26.0
A03p13450 Brassica napus HOM05D000051 ORTHO05D000015 9.3e-06 55.8 201 25.9
BraA03t10652Z Brassica rapa HOM05D000051 ORTHO05D000015 9.3e-06 55.8 201 25.9
AUR62002994 Chenopodium quinoa HOM05D000312 ORTHO05D000221 9.3e-06 55.8 447 22.6
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 9.3e-06 55.8 299 23.7
Prupe.4G160900 Prunus persica HOM05D000051 ORTHO05D000015 9.3e-06 55.8 272 25.7
RcHm_v2.0_Chr5g0028581 Rosa chinensis HOM05D000051 ORTHO05D000015 9.3e-06 55.8 343 25.9


User provided reference genes

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