Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-56 222.6 115 100.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.5e-56 222.6 115 100.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 3.0e-52 208.4 115 93.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 2.5e-51 205.3 115 93.0
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 5.8e-48 194.1 115 87.8
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-46 189.9 115 83.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.1e-45 185.7 115 80.9
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.0e-44 183.3 115 79.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-44 182.2 115 79.1
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.3e-44 182.2 115 79.1
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 3.0e-44 181.8 115 80.0
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.3e-43 178.3 115 78.3
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 9.6e-43 176.8 115 76.5
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.3e-42 176.4 115 80.0
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 3.6e-42 174.9 115 80.0
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.8e-41 172.6 117 79.5
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 3.4e-40 168.3 115 72.2
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.8e-40 167.5 115 73.0
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-39 166.4 116 72.4
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.3e-39 166.4 116 72.4
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 3.5e-37 158.3 117 70.9
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 6.9e-33 144.1 115 67.8
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 7.6e-32 140.6 117 63.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.7e-29 132.1 118 61.0
BolC8t52343H Brassica oleracea HOM05D005226 ORTHO05D004666 1.0e-23 113.6 63 93.7
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-16 90.1 115 45.2
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 3.4e-16 88.6 115 45.2
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 7.7e-16 87.4 115 42.6
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.0e-15 87.0 108 47.2
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.8e-15 85.1 115 42.6
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.9e-14 82.8 117 41.9
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 3.2e-14 82.0 99 47.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.2e-14 81.6 117 41.9
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 7.2e-14 80.9 115 42.6
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 9.4e-14 80.5 117 42.7
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.6e-13 79.7 113 42.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.6e-13 79.7 102 45.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 117 41.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.1e-13 79.3 102 44.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.7e-13 79.0 106 44.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 7.9e-13 77.4 104 44.2
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 7.9e-13 77.4 78 52.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.9e-13 77.4 99 44.4
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.0e-12 77.0 113 43.4
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-12 77.0 121 39.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.3e-12 75.9 102 46.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-12 75.1 121 38.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.9e-12 75.1 121 38.0
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.1e-12 74.7 121 38.8
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-11 73.6 121 38.8
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.0e-11 72.8 106 41.5
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.3e-11 72.0 99 42.4
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.3e-11 71.6 114 39.5
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.3e-11 71.6 113 39.8
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 5.7e-11 71.2 102 39.2
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 5.7e-11 71.2 96 40.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.7e-11 71.2 102 42.2
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.4e-11 70.9 95 44.2
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.4e-11 70.9 122 36.9
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 7.4e-11 70.9 102 42.2
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 9.7e-11 70.5 95 42.1
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.3e-10 70.1 105 42.9
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.3e-10 70.1 109 40.4
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.3e-10 70.1 109 39.4
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.3e-10 70.1 116 37.9
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.7e-10 69.7 98 46.9
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.2e-10 69.3 69 42.0
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.2e-10 69.3 112 38.4
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.2e-10 69.3 112 38.4
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.8e-10 68.9 103 41.7
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 101 38.6
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.8e-10 68.9 99 40.4
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.8e-10 68.9 77 46.8
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.8e-10 68.9 98 40.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 3.7e-10 68.6 86 40.7
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.7e-10 68.6 89 40.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 4.8e-10 68.2 102 42.2
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 8.2e-10 67.4 95 44.2
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.1e-09 67.0 102 42.2
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.1e-09 67.0 102 40.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.4e-09 66.6 78 46.2
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.4e-09 66.6 105 40.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.4e-09 66.6 113 38.9
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.4e-09 66.6 91 38.5
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.8e-09 66.2 99 40.4
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.8e-09 66.2 69 42.0
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.4e-09 65.9 99 39.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.4e-09 65.9 97 41.2
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-09 65.9 89 39.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.4e-09 65.9 105 37.1
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.1e-09 65.5 87 41.4
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 4.1e-09 65.1 99 41.4
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 4.1e-09 65.1 83 39.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 6.9e-09 64.3 119 34.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 6.9e-09 64.3 99 42.4
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 9.1e-09 63.9 119 34.5
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 9.1e-09 63.9 119 34.5
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 9.1e-09 63.9 119 34.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 9.1e-09 63.9 105 37.1
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.2e-08 63.5 95 41.1
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-08 63.5 89 37.1
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.0e-08 62.8 73 52.1
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.0e-08 62.8 77 45.5
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.6e-08 62.4 124 33.9
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.6e-08 62.4 101 42.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.6e-08 62.4 101 39.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 3.4e-08 62.0 65 44.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.4e-08 62.0 110 36.4
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 3.4e-08 62.0 69 49.3
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 3.4e-08 62.0 69 49.3
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.4e-08 62.0 113 34.5
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 4.5e-08 61.6 88 42.0
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 4.5e-08 61.6 74 41.9
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.9e-08 61.2 112 34.8
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.9e-08 61.2 122 35.2
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 7.7e-08 60.8 121 32.2
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.0e-07 60.5 122 32.0
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.0e-07 60.5 74 45.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.3e-07 60.1 102 39.2
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-07 60.1 101 35.6
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.7e-07 59.7 78 39.7
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.7e-07 59.7 98 38.8
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.7e-07 59.7 100 36.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-07 59.3 113 35.4
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-07 59.3 121 33.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.9e-07 58.9 66 47.0
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 3.8e-07 58.5 64 46.9
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 3.8e-07 58.5 113 35.4
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 3.8e-07 58.5 113 35.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 3.8e-07 58.5 99 37.4
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.8e-07 58.5 108 31.5
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.0e-07 58.2 113 35.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.0e-07 58.2 103 36.9
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 5.0e-07 58.2 75 42.7
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 6.5e-07 57.8 113 34.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 6.5e-07 57.8 113 34.5
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 8.5e-07 57.4 112 36.6
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 1.1e-06 57.0 126 32.5
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.1e-06 57.0 110 36.4
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.1e-06 57.0 87 34.5
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.4e-06 56.6 99 33.3
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.4e-06 56.6 72 47.2
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.9e-06 56.2 115 34.8
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.5e-06 55.8 78 42.3
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 2.5e-06 55.8 79 40.5
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 3.2e-06 55.5 82 37.8
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.2e-06 55.1 115 32.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.5e-06 54.7 92 34.8
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 7.2e-06 54.3 89 36.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 9.4e-06 53.9 89 39.3


User provided reference genes

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