Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-56 223.4 134 100.0
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 2.0e-55 219.2 134 97.0
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 3.5e-52 208.4 134 91.8
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-50 203.4 134 91.8
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.0e-31 139.4 136 65.4
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.1e-24 117.1 128 46.9
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.5e-23 113.2 128 45.3
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.4e-23 111.7 136 41.2
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.9e-22 109.0 111 50.5
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.4e-22 107.8 129 43.4
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 7.1e-21 104.4 137 38.7
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 9.2e-21 104.0 138 38.4
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-20 103.6 138 38.4
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.2e-20 103.6 138 38.4
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.5e-20 102.1 138 42.0
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-19 100.5 135 38.5
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 1.7e-19 99.8 119 40.3
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 3.0e-19 99.0 136 39.0
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 3.0e-19 99.0 136 39.0
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.1e-19 98.2 135 40.7
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.1e-18 97.1 141 41.1
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-18 96.7 135 37.8
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 4.3e-18 95.1 124 39.5
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 9.5e-18 94.0 134 39.6
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-16 90.5 131 38.2
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 1.1e-16 90.5 138 41.3
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.8e-16 89.7 97 53.6
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-16 89.4 131 38.2
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 3.1e-16 89.0 134 38.8
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 5.2e-16 88.2 131 37.4
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 6.8e-16 87.8 131 37.4
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.8e-16 87.8 124 45.2
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.9e-16 87.4 135 34.8
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-15 86.7 151 51.7
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.5e-15 86.7 135 51.1
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 2.6e-15 85.9 134 37.3
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-15 85.9 151 51.7
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-15 85.9 134 37.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 2.6e-15 85.9 134 37.3
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 4.4e-15 85.1 138 37.7
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 4.4e-15 85.1 138 37.7
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 5.8e-15 84.7 134 36.6
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.7e-14 83.2 101 40.6
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 3.7e-14 82.0 138 37.0
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 3.7e-14 82.0 51 64.7
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 4.9e-14 81.6 135 36.3
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 6.4e-14 81.3 114 37.7
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-13 80.5 138 35.5
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-13 80.5 138 35.5
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-13 80.1 126 34.9
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-13 80.1 131 35.9
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 1.4e-13 80.1 126 34.9
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 1.4e-13 80.1 122 35.2
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.4e-13 80.1 134 47.8
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.4e-13 80.1 134 37.3
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-13 79.3 120 35.8
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 5.4e-13 78.2 131 39.7
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 7.1e-13 77.8 134 34.3
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 9.2e-13 77.4 133 35.3
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 9.2e-13 77.4 131 39.7
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.2e-12 77.0 130 33.8
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.6e-12 76.6 134 35.8
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 4.6e-12 75.1 119 40.3
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.6e-12 75.1 112 39.3
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-11 73.9 122 40.2
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 2.3e-11 72.8 115 40.0
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 3.0e-11 72.4 134 33.6
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 3.9e-11 72.0 125 34.4
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 3.9e-11 72.0 120 34.2
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 8.6e-11 70.9 134 39.6
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-10 69.7 135 37.8
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 1.9e-10 69.7 135 37.8
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-10 69.7 115 35.7
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 2.5e-10 69.3 115 35.7
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 4.3e-10 68.6 115 34.8
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 4.3e-10 68.6 133 35.3
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 5.6e-10 68.2 136 31.6
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 9.6e-10 67.4 134 30.6
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 9.6e-10 67.4 139 34.5
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.6e-09 66.6 129 33.3
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 2.8e-09 65.9 46 60.9
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-09 65.9 133 30.1
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-09 65.9 133 30.1
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.2e-09 64.7 128 32.8
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 6.2e-09 64.7 132 34.8
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 6.2e-09 64.7 133 29.3
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 6.2e-09 64.7 136 30.9
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 6.2e-09 64.7 136 29.4
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 8.1e-09 64.3 135 30.4
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-08 63.9 115 33.0
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.1e-08 63.9 139 32.4
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-08 63.9 134 35.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.4e-08 63.5 135 31.1
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 1.4e-08 63.5 136 30.9
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 1.4e-08 63.5 134 29.9
AL1G24140 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.8e-08 63.2 58 50.0
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 1.8e-08 63.2 118 38.1
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.8e-08 63.2 136 27.9
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-08 62.8 135 35.6
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 2.4e-08 62.8 135 35.6
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.0e-08 62.0 132 30.3
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 4.0e-08 62.0 136 30.9
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 4.0e-08 62.0 125 29.6
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 5.2e-08 61.6 136 27.9
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.0e-07 59.7 136 31.6
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.4e-07 58.9 46 56.5
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 3.4e-07 58.9 135 31.1
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 4.4e-07 58.5 137 28.5
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 5.8e-07 58.2 142 29.6
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 5.8e-07 58.2 140 30.7
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 7.6e-07 57.8 131 31.3
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 7.6e-07 57.8 133 30.8
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 9.9e-07 57.4 110 30.0
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.9e-07 57.4 137 28.5
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 9.9e-07 57.4 131 32.1
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 9.9e-07 57.4 135 29.6
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 9.9e-07 57.4 135 31.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.3e-06 57.0 48 50.0
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.7e-06 56.6 132 29.5
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.2e-06 56.2 48 45.8
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 2.2e-06 56.2 42 54.8
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 2.2e-06 56.2 42 54.8
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.9e-06 55.8 130 27.7
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 3.8e-06 55.5 145 29.0
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 4.9e-06 55.1 133 24.1
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 4.9e-06 55.1 133 31.6
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 6.4e-06 54.7 51 45.1
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 6.4e-06 54.7 133 26.3
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.4e-06 54.7 136 29.4
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 6.4e-06 54.7 136 28.7
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 6.4e-06 54.7 42 52.4


User provided reference genes

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