Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 0.0e+00 1319.7 811 100.0
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 0.0e+00 1312.7 811 99.6
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 0.0e+00 1279.2 813 94.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 0.0e+00 1274.2 814 95.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 0.0e+00 1121.3 814 85.0
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 0.0e+00 1120.1 818 81.9
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 0.0e+00 1094.3 815 80.6
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 8.2e-306 1053.5 813 78.4
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.7e-303 1045.8 814 74.0
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.4e-296 1021.5 815 76.8
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.3e-295 1019.6 836 74.3
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 4.7e-293 1011.1 812 77.6
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 7.7e-280 967.2 920 65.7
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.3e-271 939.9 828 68.5
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 8.6e-239 830.9 753 66.0
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.3e-226 790.4 812 55.5
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.2e-226 789.6 827 63.6
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 3.5e-224 782.3 811 60.5
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.1e-222 777.3 836 56.0
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.5e-222 776.9 821 58.8
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.3e-222 775.4 821 58.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 4.8e-221 771.9 819 58.5
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 6.9e-220 768.1 843 53.0
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.6e-219 766.1 829 59.0
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.4e-219 765.8 821 58.5
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.3e-218 763.8 831 56.4
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 4.9e-218 761.9 826 57.1
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 3.5e-216 755.7 819 56.8
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 4.6e-216 755.4 813 59.2
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 7.9e-216 754.6 811 59.3
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.3e-215 753.8 840 57.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.3e-213 747.3 814 56.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 6.2e-213 745.0 839 57.3
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.0e-212 742.3 823 59.2
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 6.9e-212 741.5 846 54.7
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 1.2e-211 740.7 828 55.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.6e-211 739.6 876 53.7
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 3.4e-211 739.2 824 60.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 7.6e-211 738.0 833 52.8
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.9e-209 733.4 828 55.7
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.5e-208 729.2 812 54.8
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.0e-207 727.6 819 51.5
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.0e-207 727.6 820 55.2
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.5e-206 723.0 820 57.8
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 5.6e-206 721.8 827 57.9
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.3e-205 720.7 828 54.0
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.1e-205 719.9 836 55.7
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 4.8e-205 718.8 827 54.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.1e-204 717.6 821 53.0
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.8e-204 716.8 830 54.6
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.9e-204 714.9 825 53.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.0e-203 713.4 824 58.6
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.5e-203 712.2 827 55.9
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 7.6e-203 711.4 823 53.7
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.9e-202 709.5 827 55.1
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.9e-202 708.8 825 53.8
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 8.4e-202 708.0 819 55.8
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 4.2e-201 705.7 834 54.3
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 5.5e-201 705.3 812 51.6
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 7.1e-201 704.9 834 53.1
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 1.2e-200 704.1 825 56.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.2e-200 704.1 798 57.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 2.3e-199 699.9 833 51.6
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.3e-199 699.9 833 54.9
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 2.3e-199 699.9 822 54.9
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.7e-199 698.0 818 52.8
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 8.7e-199 698.0 834 55.9
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.5e-198 696.4 845 58.1
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 8.2e-197 691.4 815 56.8
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 8.2e-197 691.4 842 50.5
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 2.4e-196 689.9 819 50.3
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 4.1e-196 689.1 795 57.9
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 9.0e-196 688.0 836 51.4
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.5e-195 687.2 827 53.3
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.7e-194 683.7 818 51.8
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 5.0e-194 682.2 834 52.0
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 7.2e-193 678.3 800 54.4
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 7.2e-193 678.3 820 52.0
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 9.4e-193 677.9 821 56.4
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.2e-192 677.6 815 52.1
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-192 676.8 825 51.5
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.7e-192 676.4 826 54.8
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 4.6e-192 675.6 826 50.2
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 9.7e-190 667.9 829 53.9
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.3e-189 667.5 776 53.4
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-189 667.2 829 49.2
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 2.4e-188 663.3 844 50.2
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.4e-188 663.3 827 54.2
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 3.8e-186 656.0 827 52.1
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.9e-185 653.7 879 51.6
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 8.8e-183 644.8 830 52.4
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 4.4e-182 642.5 817 52.0
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 4.4e-182 642.5 806 49.1
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.2e-181 638.3 831 49.5
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.2e-181 638.3 821 47.9
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 3.1e-180 636.3 814 53.3
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.0e-179 633.6 529 77.7
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 3.7e-173 612.8 820 48.3
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 2.6e-171 606.7 698 58.5
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 7.7e-171 605.1 770 51.6
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.8e-164 583.9 838 42.8
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.4e-158 562.8 811 46.4
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.8e-158 561.6 826 46.9
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 3.8e-154 549.7 651 53.9
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 3.4e-150 536.6 819 48.1
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 4.4e-142 509.6 830 45.9
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 6.4e-141 505.8 815 42.5
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.5e-137 494.6 814 40.4
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.6e-136 491.1 814 40.4
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.8e-136 490.3 814 39.9
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 7.5e-134 482.3 572 61.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 8.3e-133 478.8 847 38.5
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.4e-127 461.5 696 47.1
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 9.9e-126 455.3 644 52.5
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.2e-125 454.1 444 55.2
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 1.9e-121 441.0 749 43.8
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.3e-117 428.3 725 42.1
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 4.8e-112 409.8 886 40.9
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.8e-111 407.9 858 35.7
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 7.1e-108 396.0 470 61.1
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.1e-107 394.4 466 53.6
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 7.3e-105 386.0 530 48.5
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.5e-102 378.3 569 51.7
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.4e-100 371.7 418 61.2
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 5.5e-92 343.2 357 56.0
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 3.1e-87 327.4 843 36.8
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.0e-86 324.7 313 55.9
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 2.5e-81 307.8 543 38.9
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.4e-79 302.0 510 39.4
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.9e-78 296.6 498 41.4
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-77 295.4 280 56.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 2.7e-75 287.7 454 39.4
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.4e-74 285.4 799 34.2
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 1.8e-71 275.0 528 34.7
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.5e-60 238.8 456 37.1
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 5.5e-60 236.9 131 93.9
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.0e-51 206.5 510 30.2
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 7.0e-47 193.4 355 52.1
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 9.1e-47 193.0 196 52.6
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.3e-45 189.1 391 48.8
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 1.2e-38 166.0 173 55.5
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.8e-35 154.8 96 85.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.8e-35 154.8 418 33.0
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.4e-34 152.5 136 58.1
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 2.3e-34 151.8 98 84.7
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.7e-29 135.6 330 33.0
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-28 132.1 309 33.7
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 2.5e-28 131.7 133 56.4
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 6.8e-26 123.6 123 56.1
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.7e-21 109.0 127 49.6
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 3.9e-21 107.8 59 94.9
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.7e-19 100.9 93 54.8
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.4e-18 99.4 77 63.6
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-17 96.3 349 30.9
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.4e-17 94.4 78 62.8
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-16 92.4 123 49.6
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.2e-15 86.7 114 44.7
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-14 85.1 76 59.2
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 6.6e-13 80.5 44 81.8
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 1.1e-12 79.7 47 89.4
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-12 79.0 80 53.8
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.5e-12 78.6 69 58.0
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.3e-12 78.2 118 41.5
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-11 75.9 293 31.4
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-11 74.7 80 51.2
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.2e-11 73.9 152 40.1
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.4e-09 68.2 62 58.1
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.4e-09 68.2 80 47.5
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 4.4e-09 67.8 63 61.9
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-08 66.2 263 27.8
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 3.7e-08 64.7 213 28.2
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 3.7e-08 64.7 119 40.3
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-08 64.7 97 43.3
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 8.4e-08 63.5 51 68.6
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.1e-07 63.2 77 45.5
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 1.9e-07 62.4 38 76.3
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.2e-06 59.7 70 51.4
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-06 59.7 122 35.2


User provided reference genes

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