Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 4.9e-94 347.8 179 100.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 2.6e-63 245.7 202 70.3
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.2e-61 238.8 178 75.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.1e-60 236.1 165 80.0
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 1.3e-59 233.4 155 82.6
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-59 231.9 156 81.4
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 3.9e-59 231.9 156 81.4
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 8.7e-59 230.7 158 79.7
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-58 230.3 156 82.1
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 7.4e-58 227.6 169 76.9
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 9.6e-58 227.3 162 79.0
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 9.6e-58 227.3 162 79.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.8e-57 225.7 154 79.9
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.8e-56 223.0 160 78.1
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 5.3e-56 221.5 158 79.1
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.6e-55 219.2 165 75.8
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 5.8e-55 218.0 156 78.2
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 1.7e-54 216.5 162 76.5
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.2e-54 216.1 147 81.0
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.2e-54 216.1 147 81.0
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 3.3e-50 202.2 137 81.0
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 8.2e-49 197.6 156 70.5
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 6.3e-41 171.4 159 61.0
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.2e-39 167.2 113 80.5
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.0e-38 164.1 144 61.1
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.3e-38 163.7 181 53.0
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.7e-38 163.3 176 54.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.9e-38 162.5 176 54.5
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 6.5e-38 161.4 175 54.3
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.5e-38 161.4 176 54.5
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 8.5e-38 161.0 176 54.0
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.9e-37 159.8 180 53.9
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 2.5e-37 159.5 166 55.4
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.2e-37 159.1 144 59.0
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 5.5e-37 158.3 152 59.9
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 9.4e-37 157.5 166 55.4
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 9.4e-37 157.5 151 58.3
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 9.4e-37 157.5 151 57.6
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.2e-36 157.1 176 52.3
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.2e-36 157.1 166 55.4
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 1.6e-36 156.8 152 57.9
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 2.1e-36 156.4 154 53.2
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 2.1e-36 156.4 179 50.8
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.7e-36 156.0 147 58.5
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 2.7e-36 156.0 144 58.3
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 3.6e-36 155.6 178 51.1
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 3.6e-36 155.6 175 53.1
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 3.6e-36 155.6 178 51.7
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.7e-36 155.2 178 50.6
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 7.9e-36 154.5 173 51.4
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 7.9e-36 154.5 178 52.2
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 7.9e-36 154.5 152 54.6
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 7.9e-36 154.5 173 52.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.4e-35 153.7 200 49.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.4e-35 153.7 165 52.1
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 2.3e-35 152.9 147 55.8
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.3e-35 152.9 153 55.6
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.0e-35 152.5 146 57.5
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.0e-35 152.5 147 57.1
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 3.9e-35 152.1 156 53.8
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.9e-35 152.1 156 53.8
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 3.9e-35 152.1 148 56.8
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 5.1e-35 151.8 175 49.1
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 6.7e-35 151.4 149 54.4
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.1e-34 150.6 169 53.8
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.1e-34 150.6 148 56.8
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.6e-34 149.4 144 55.6
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 3.3e-34 149.1 148 56.1
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 4.4e-34 148.7 77 100.0
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 4.4e-34 148.7 164 54.9
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.4e-34 148.7 153 54.9
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 5.7e-34 148.3 174 52.3
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.7e-34 148.3 146 56.2
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 5.7e-34 148.3 158 52.5
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 7.4e-34 147.9 146 52.7
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 7.4e-34 147.9 165 50.9
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 7.4e-34 147.9 165 50.9
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 7.4e-34 147.9 165 50.9
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 7.4e-34 147.9 180 49.4
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 9.7e-34 147.5 152 53.3
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.7e-33 146.7 175 48.0
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.2e-33 146.4 147 55.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 2.2e-33 146.4 159 56.6
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.8e-33 146.0 136 55.9
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.7e-33 145.6 151 53.0
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 3.7e-33 145.6 179 48.6
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 4.8e-33 145.2 140 54.3
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 6.3e-33 144.8 147 54.4
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 6.3e-33 144.8 135 56.3
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.1e-32 144.1 152 52.6
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.1e-32 144.1 165 51.5
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.1e-32 144.1 153 52.3
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.4e-32 143.7 165 50.3
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.8e-32 143.3 152 51.3
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 4.1e-32 142.1 130 56.9
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.1e-32 142.1 156 51.9
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 7.0e-32 141.4 168 47.6
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 9.1e-32 141.0 177 49.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.0e-31 139.8 154 51.3
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.6e-31 139.4 140 52.9
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 7.7e-31 137.9 161 48.4
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 1.0e-30 137.5 164 48.2
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.0e-30 137.5 161 48.4
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.3e-30 137.1 158 51.3
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.3e-30 137.1 161 49.7
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 2.9e-30 136.0 69 100.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.5e-29 133.7 128 57.8
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.5e-29 132.9 146 51.4
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 3.2e-29 132.5 183 44.8
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 5.5e-29 131.7 148 52.0
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 5.5e-29 131.7 114 60.5
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 9.4e-29 131.0 138 51.4
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.6e-28 129.0 146 47.9
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 8.0e-28 127.9 146 47.3
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.0e-27 125.9 146 47.3
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.5e-26 123.6 174 43.7
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.5e-26 123.6 113 56.6
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.7e-25 120.2 160 45.0
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.2e-25 119.8 148 44.6
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 2.8e-25 119.4 149 47.0
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 4.8e-25 118.6 105 59.0
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.1e-24 117.5 160 49.4
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.8e-24 116.7 175 44.6
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.8e-24 116.7 151 47.7
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.4e-24 116.3 115 58.3
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.1e-24 115.5 149 45.6
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-23 113.6 129 51.9
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 3.6e-20 102.4 151 41.7
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 4.0e-19 99.0 117 49.6
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 2.8e-17 92.8 176 39.8
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 2.4e-16 89.7 62 69.4
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 3.8e-14 82.4 106 46.2
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.9e-13 80.1 60 65.0
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.2e-12 77.4 55 72.7
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 4.0e-11 72.4 83 47.0
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 2.0e-10 70.1 144 31.9
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 2.2e-09 66.6 105 43.8
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.1e-08 64.3 153 33.3
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.5e-07 58.9 73 45.2
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 8.6e-06 54.7 112 34.8


User provided reference genes

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