Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-132 476.5 233 100.0
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 7.5e-127 457.2 233 95.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.2e-116 423.3 230 89.6
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 3.8e-115 418.3 236 88.6
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.4e-112 409.8 233 85.4
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 5.9e-108 394.4 233 81.1
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 5.9e-108 394.4 233 81.5
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 5.9e-108 394.4 233 81.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 7.8e-108 394.0 255 79.2
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.0e-107 393.7 234 82.1
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.9e-107 392.1 234 81.6
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.6e-107 391.0 233 81.1
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 8.6e-107 390.6 233 81.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.3e-106 388.7 225 80.9
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 3.3e-106 388.7 234 80.8
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.6e-105 386.3 225 80.4
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.1e-105 386.0 235 81.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.1e-105 386.0 233 80.3
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.8e-104 380.9 234 79.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 9.8e-103 377.1 233 79.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 4.6e-100 368.2 233 77.7
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.6e-97 358.6 233 76.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-93 345.9 248 71.8
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.6e-87 325.9 215 71.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.2e-86 322.8 229 66.4
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.9e-83 312.0 226 63.7
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 8.9e-72 274.2 196 61.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.2e-70 269.6 209 56.5
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 2.9e-70 269.2 213 55.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.9e-70 268.5 200 60.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.4e-70 268.1 203 59.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 8.4e-70 267.7 206 59.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.2e-69 265.8 212 55.7
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.2e-69 265.4 210 55.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.2e-68 263.8 235 53.2
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.1e-68 263.1 204 54.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.1e-68 263.1 211 56.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.5e-68 262.3 210 54.8
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.3e-67 260.4 219 54.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.7e-67 260.0 226 54.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.0e-67 259.2 234 52.6
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.0e-67 259.2 231 51.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.9e-67 258.8 213 54.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 5.1e-67 258.5 211 55.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.1e-66 257.3 209 54.1
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.1e-66 257.3 210 55.7
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.1e-66 257.3 219 54.8
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.5e-66 256.1 196 59.2
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 3.3e-66 255.8 208 56.2
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 3.3e-66 255.8 215 56.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 4.3e-66 255.4 208 55.8
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.3e-66 255.4 196 59.7
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 9.6e-66 254.2 210 56.2
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 9.6e-66 254.2 204 54.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.8e-65 252.7 217 53.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.6e-65 252.3 241 50.6
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 4.8e-65 251.9 210 54.8
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 8.1e-65 251.1 214 54.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.1e-64 250.8 217 55.8
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.8e-64 250.0 208 55.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.3e-64 248.4 212 55.2
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 5.3e-64 248.4 212 56.1
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-63 247.3 210 54.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.5e-63 246.9 209 52.6
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.5e-63 246.9 204 53.4
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.5e-63 246.9 210 54.8
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.5e-63 246.9 210 53.8
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.0e-63 246.5 208 54.3
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.6e-63 246.1 235 50.2
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.4e-63 245.7 235 51.5
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.5e-63 245.4 210 53.8
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 5.8e-63 245.0 230 48.3
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 5.8e-63 245.0 226 50.4
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 9.9e-63 244.2 196 55.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 9.9e-63 244.2 210 52.4
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.7e-62 243.4 200 52.5
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.7e-62 243.4 228 48.7
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.7e-62 243.4 228 50.0
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.2e-62 243.0 195 56.9
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.8e-62 242.3 229 49.3
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 8.4e-62 241.1 216 52.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.4e-61 238.4 214 51.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.5e-60 235.7 239 47.3
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.6e-60 235.3 210 51.4
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 4.6e-60 235.3 215 49.8
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-59 233.8 234 47.0
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.1e-58 230.7 220 49.5
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.5e-58 230.3 197 52.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-58 229.9 189 55.6
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-58 229.6 224 46.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.3e-58 229.2 224 46.0
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.3e-58 229.2 188 53.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 4.3e-58 228.8 210 50.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 7.4e-58 228.0 210 51.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 9.6e-58 227.6 224 45.5
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 4.8e-57 225.3 225 44.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 8.1e-57 224.6 208 51.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.8e-56 223.4 186 53.2
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.8e-56 223.4 175 58.9
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.0e-56 221.1 210 49.5
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.5e-55 220.3 189 54.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.5e-55 218.8 214 50.0
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 5.8e-55 218.4 187 49.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 5.8e-55 218.4 210 48.6
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.3e-54 217.2 193 53.9
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.6e-52 210.3 167 53.3
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.1e-52 209.9 201 52.2
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.9e-52 208.0 219 47.0
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.1e-50 204.1 178 51.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 9.6e-50 201.1 191 49.7
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 4.8e-49 198.7 177 54.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 8.2e-49 198.0 161 54.0
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 3.1e-48 196.1 175 49.7
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.0e-48 195.7 187 50.3
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.2e-47 194.1 186 46.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.5e-47 193.7 215 47.4
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 4.5e-47 192.2 201 46.8
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 6.5e-46 188.3 130 62.3
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.1e-45 187.6 224 46.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.7e-43 178.3 234 40.6
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 8.7e-43 177.9 212 42.0
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.5e-42 176.4 232 40.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 5.7e-42 175.3 198 42.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 7.4e-42 174.9 242 38.4
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.5e-39 167.2 184 42.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.9e-39 165.2 106 66.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.3e-38 164.1 237 40.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.9e-37 160.2 114 60.5
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.8e-33 146.4 139 47.5
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 3.7e-33 146.0 136 51.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.5e-26 124.0 153 44.4
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.3e-25 120.9 107 55.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-24 117.9 53 92.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.4e-23 112.8 82 52.4
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-22 110.9 67 76.1
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.6e-18 96.7 57 64.9
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.7e-17 94.0 59 64.4
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 6.3e-17 92.0 61 55.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.8e-16 90.5 59 61.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.0e-15 87.0 63 54.0
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 6.5e-14 82.0 95 47.4
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.1e-12 77.0 52 63.5
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.6e-12 76.3 152 32.9
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.4e-11 74.3 102 44.1
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 6.7e-11 72.0 51 60.8
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.2e-10 71.2 97 38.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.0e-10 70.5 158 27.8
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 2.0e-10 70.5 97 40.2
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.7e-09 67.4 49 59.2
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.5e-07 59.7 82 37.8
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-06 57.4 33 60.6


User provided reference genes

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