Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 7.1e-33 143.3 69 100.0
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 3.5e-32 141.0 69 98.6
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 6.0e-32 140.2 69 97.1
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 6.2e-29 130.2 69 94.2
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 2.4e-25 118.2 69 84.1
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 1.2e-24 115.9 69 82.6
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 7.8e-24 113.2 69 81.2
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 3.0e-23 111.3 69 76.8
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 1.1e-22 109.4 70 77.1
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 2.8e-21 104.8 70 78.6
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 4.4e-19 97.4 69 71.0
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 3.6e-13 77.8 68 54.4
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 5.3e-12 73.9 67 58.2
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 2.6e-11 71.6 44 70.5
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 5.8e-11 70.5 69 52.2
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 7.6e-11 70.1 46 65.2
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 9.9e-11 69.7 68 51.5
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 1.3e-10 69.3 63 52.4
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 1.7e-10 68.9 68 50.0
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 2.9e-10 68.2 65 53.8
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 2.9e-10 68.2 43 65.1
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 3.8e-10 67.8 40 67.5
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 6.4e-10 67.0 65 50.8
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 6.4e-10 67.0 65 52.3
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 1.9e-09 65.5 46 60.9
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 3.2e-09 64.7 69 52.2
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 4.2e-09 64.3 46 63.0
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 4.2e-09 64.3 41 68.3
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 5.4e-09 63.9 46 60.9
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 5.4e-09 63.9 43 62.8
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 7.1e-09 63.5 64 48.4
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 7.1e-09 63.5 47 61.7
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 9.3e-09 63.2 51 64.7
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 9.3e-09 63.2 45 64.4
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 1.2e-08 62.8 69 50.7
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 1.2e-08 62.8 65 49.2
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 1.2e-08 62.8 61 54.1
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 3.5e-08 61.2 43 55.8
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 3.5e-08 61.2 44 63.6
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 3.5e-08 61.2 44 63.6
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 3.5e-08 61.2 44 63.6
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 4.6e-08 60.8 44 61.4
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 6.0e-08 60.5 37 59.5
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 6.0e-08 60.5 36 69.4
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 1.3e-07 59.3 65 47.7
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 3.0e-07 58.2 41 58.5
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 3.0e-07 58.2 69 43.5
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 5.1e-07 57.4 65 49.2
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 8.7e-07 56.6 49 55.1
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 1.1e-06 56.2 55 45.5
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.1e-06 56.2 43 58.1
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.1e-06 56.2 43 58.1
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 1.5e-06 55.8 42 59.5
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 2.5e-06 55.1 49 51.0
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 3.3e-06 54.7 41 53.7
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 5.6e-06 53.9 43 62.8
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 5.6e-06 53.9 34 58.8
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 9.6e-06 53.1 41 56.1


User provided reference genes

Program Settings