Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-76 288.9 155 100.0
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 8.3e-74 280.4 153 98.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 5.6e-62 241.1 130 100.0
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 3.6e-61 238.4 130 99.2
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 3.6e-61 238.4 130 99.2
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 3.7e-58 228.4 130 96.9
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 9.2e-57 223.8 130 94.6
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.7e-55 219.5 130 91.5
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 6.6e-55 217.6 130 92.3
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.1e-54 216.9 130 91.5
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.1e-53 212.6 127 92.1
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.1e-52 210.3 130 87.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.4e-52 209.9 130 87.7
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 3.1e-52 208.8 130 86.9
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 4.0e-52 208.4 130 86.9
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 6.8e-52 207.6 130 86.2
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.2e-51 206.8 130 86.9
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.0e-51 206.1 130 85.4
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.6e-51 205.7 130 85.4
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 3.4e-51 205.3 130 85.4
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 3.4e-51 205.3 130 85.4
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 7.6e-51 204.1 130 84.6
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 7.6e-51 204.1 130 84.6
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 7.6e-51 204.1 154 74.7
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.9e-50 202.2 130 83.8
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 4.6e-48 194.9 130 80.0
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 8.7e-47 190.7 103 97.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.9e-46 189.5 128 78.1
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.3e-46 188.7 128 78.1
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.3e-46 188.7 128 78.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 5.6e-46 188.0 129 76.7
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.1e-45 186.0 128 75.8
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 4.8e-45 184.9 134 73.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 6.2e-45 184.5 160 66.2
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-44 183.7 128 75.8
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.1e-44 183.7 128 74.2
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.4e-44 183.3 128 75.0
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.4e-44 183.3 128 75.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.8e-44 183.0 126 75.4
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 2.4e-44 182.6 128 75.0
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 3.1e-44 182.2 160 65.6
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.0e-44 181.8 128 75.0
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.3e-44 181.4 126 75.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 9.0e-44 180.6 128 74.2
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.5e-43 179.9 129 75.2
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.0e-43 179.5 128 75.0
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 2.6e-43 179.1 129 75.2
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.4e-43 178.7 128 75.0
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.4e-43 178.3 128 74.2
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 4.4e-43 178.3 128 75.0
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 4.4e-43 178.3 128 73.4
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 4.4e-43 178.3 129 73.6
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 5.8e-43 177.9 128 74.2
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 7.6e-43 177.6 120 77.5
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 9.9e-43 177.2 128 74.2
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 9.9e-43 177.2 127 74.0
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.7e-42 176.4 129 72.9
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 2.9e-42 175.6 125 74.4
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 2.9e-42 175.6 127 75.6
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.9e-42 175.6 126 74.6
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.8e-42 175.3 126 74.6
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 4.9e-42 174.9 126 71.4
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 6.4e-42 174.5 126 74.6
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 8.4e-42 174.1 123 74.8
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 8.4e-42 174.1 128 73.4
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 1.1e-41 173.7 128 73.4
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.1e-41 173.7 129 71.3
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.1e-41 173.7 129 69.8
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.4e-41 173.3 126 73.0
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.9e-41 172.9 128 73.4
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.9e-41 172.9 128 72.7
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.9e-41 172.9 126 75.4
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.4e-41 172.6 154 61.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.4e-41 172.6 126 74.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 3.2e-41 172.2 126 71.4
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 4.2e-41 171.8 128 71.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 4.2e-41 171.8 128 70.3
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 4.2e-41 171.8 128 71.1
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 4.2e-41 171.8 126 74.6
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 5.4e-41 171.4 125 72.0
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 5.4e-41 171.4 128 71.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 5.4e-41 171.4 126 73.8
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 7.1e-41 171.0 129 70.5
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 9.3e-41 170.6 128 70.3
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.2e-40 170.2 129 70.5
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.2e-40 170.2 128 70.3
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.1e-40 169.5 128 71.1
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.1e-40 169.5 121 74.4
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.7e-40 169.1 128 70.3
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 2.7e-40 169.1 126 69.8
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.7e-40 169.1 121 74.4
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.6e-40 168.3 128 69.5
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 4.6e-40 168.3 125 71.2
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 7.8e-40 167.5 158 60.1
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 6.6e-39 164.5 129 67.4
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.6e-39 164.5 121 69.4
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 8.7e-39 164.1 127 69.3
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 8.7e-39 164.1 128 69.5
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.6e-38 161.4 127 67.7
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 7.3e-38 161.0 130 65.4
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.6e-37 159.8 121 66.9
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 2.1e-37 159.5 121 70.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 2.8e-37 159.1 124 67.7
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.6e-37 158.7 124 67.7
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.0e-36 155.2 116 69.8
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.9e-36 154.5 107 76.6
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 6.9e-36 154.5 125 64.8
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 6.9e-36 154.5 118 70.3
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.2e-35 153.7 99 81.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 4.5e-35 151.8 101 76.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.3e-34 150.2 101 76.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 2.2e-34 149.4 112 74.1
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 2.4e-33 146.0 125 62.4
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 4.2e-33 145.2 111 73.0
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.6e-32 143.3 97 79.4
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.1e-31 138.3 141 54.6
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.1e-29 132.9 121 58.7
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.4e-28 129.4 94 73.4
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.3e-28 128.3 123 56.9
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.2e-25 119.0 119 50.4
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 2.1e-24 116.3 79 74.7
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 6.7e-23 111.3 78 73.1
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.8e-21 105.1 79 68.4
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.1e-20 104.0 75 74.7
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.0e-19 99.8 74 70.3
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.9e-18 95.9 88 60.2
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.4e-17 93.6 86 66.3
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-13 80.5 55 74.5
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.8e-12 76.6 48 85.4
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.8e-12 76.6 48 85.4
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.8e-12 76.6 116 38.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 2.6e-11 72.8 116 40.5
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 5.9e-11 71.6 66 57.6
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.3e-10 70.5 57 64.9
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 2.9e-10 69.3 128 37.5
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 4.2e-09 65.5 39 89.7
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.2e-09 65.5 54 61.1
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 7.9e-08 61.2 33 93.9


User provided reference genes

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