Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 5.5e-267 923.7 458 100.0
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 3.4e-264 914.4 458 98.9
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.3e-263 912.5 458 98.9
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.8e-263 911.4 458 98.7
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.2e-240 836.3 461 89.4
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.5e-240 835.9 461 90.0
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 6.0e-237 823.9 461 88.3
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.9e-235 818.9 448 90.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.2e-234 816.2 451 89.4
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 4.7e-234 814.3 460 87.8
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 4.7e-234 814.3 460 87.8
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 3.4e-224 781.6 452 83.8
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 9.9e-216 753.4 449 82.4
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.6e-202 708.4 424 79.5
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.2e-200 703.4 446 76.7
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 3.4e-200 701.8 434 77.4
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.9e-199 698.0 448 75.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 4.2e-198 694.9 434 77.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 4.2e-198 694.9 446 76.5
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 9.3e-198 693.7 465 74.0
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 7.9e-197 690.6 434 76.7
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 7.9e-197 690.6 434 76.7
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.9e-195 686.0 430 77.4
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 4.3e-195 684.9 433 75.5
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.4e-195 684.1 433 75.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 6.2e-194 681.0 434 76.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.2e-192 676.8 430 76.5
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.2e-192 676.8 430 76.5
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-192 676.4 437 75.1
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.6e-192 675.6 428 75.9
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 3.4e-192 675.2 436 75.0
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.8e-191 671.8 424 76.4
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 6.5e-191 671.0 451 71.8
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 8.4e-191 670.6 431 74.5
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 8.4e-191 670.6 435 74.5
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-190 670.2 452 71.7
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.5e-190 669.1 440 72.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.2e-189 666.8 452 71.7
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 3.5e-189 665.2 453 71.5
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.5e-189 665.2 428 75.0
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 3.5e-189 665.2 452 71.0
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.1e-187 660.2 437 72.8
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.5e-187 659.8 435 73.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 4.3e-187 658.3 433 73.0
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 5.7e-187 657.9 454 71.4
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 9.6e-187 657.1 429 73.7
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.1e-186 656.0 444 70.7
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 2.8e-186 655.6 446 72.2
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 6.3e-186 654.4 430 74.2
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 6.3e-186 654.4 429 73.0
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 6.3e-186 654.4 434 73.3
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.8e-185 652.9 436 72.9
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.8e-185 652.9 452 69.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.8e-185 652.9 430 73.0
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.4e-185 652.5 446 70.9
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.4e-185 652.5 425 74.1
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.1e-185 652.1 454 70.3
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.1e-185 652.1 436 71.6
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.1e-185 651.7 440 70.9
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 5.3e-185 651.4 435 71.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 5.3e-185 651.4 433 72.5
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 6.9e-185 651.0 430 73.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 6.9e-185 651.0 452 71.2
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 9.0e-185 650.6 434 72.8
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.2e-184 650.2 434 71.9
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.2e-184 650.2 434 71.9
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.2e-184 650.2 434 71.9
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.2e-184 650.2 448 71.2
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.0e-184 649.4 429 73.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.5e-184 648.3 425 73.2
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 4.5e-184 648.3 431 73.1
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.6e-184 647.5 425 73.4
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-184 647.5 434 71.4
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-184 647.5 434 71.4
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.0e-183 647.1 434 71.4
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.3e-183 646.7 446 70.0
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.3e-183 646.7 428 72.7
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.3e-183 646.7 452 69.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 8.5e-183 644.0 434 71.2
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.1e-182 643.7 424 72.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-182 642.5 434 71.7
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.2e-182 641.7 430 71.4
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 5.5e-182 641.3 459 67.5
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 7.2e-182 641.0 430 71.2
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 7.2e-182 641.0 429 72.5
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 9.3e-182 640.6 428 72.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 9.3e-182 640.6 424 73.3
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.2e-181 640.2 424 73.1
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.1e-181 639.4 434 70.7
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.0e-180 637.1 433 69.5
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.0e-180 637.1 454 67.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.8e-180 636.3 434 71.0
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.9e-180 635.2 434 71.7
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.1e-180 634.8 439 69.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.9e-179 632.9 428 72.0
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.9e-179 632.9 435 71.0
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.4e-179 630.9 407 75.9
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 7.4e-179 630.9 438 68.3
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 6.3e-178 627.9 424 72.2
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 5.9e-176 621.3 452 67.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 5.9e-176 621.3 437 68.2
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 3.8e-175 618.6 442 68.6
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 6.5e-175 617.8 432 69.7
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 8.5e-175 617.5 436 68.1
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.1e-174 617.1 430 69.8
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.4e-174 616.7 413 72.9
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.5e-174 615.9 454 65.4
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 7.2e-174 614.4 436 68.8
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 9.4e-174 614.0 437 67.7
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 9.4e-174 614.0 427 71.0
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-173 613.6 439 66.7
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.1e-173 612.8 430 68.6
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.7e-173 612.5 424 70.3
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.7e-173 612.5 434 68.4
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.6e-173 612.1 436 68.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 6.1e-173 611.3 427 70.0
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 6.1e-173 611.3 427 69.6
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.0e-172 610.5 429 68.5
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 5.1e-172 608.2 427 69.3
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.1e-172 608.2 425 69.4
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 5.1e-172 608.2 402 73.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.6e-171 605.9 436 67.2
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 5.7e-171 604.7 450 65.1
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 7.4e-171 604.4 425 69.9
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 2.8e-170 602.4 431 67.3
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 8.2e-170 600.9 438 67.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.1e-169 598.6 423 70.0
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.4e-168 595.5 425 66.6
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.5e-168 595.1 406 70.4
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.7e-167 593.2 430 68.1
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.2e-167 592.8 428 65.9
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.8e-167 592.0 423 69.3
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.9e-166 589.7 433 64.9
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.5e-166 589.3 435 66.4
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 1.4e-164 583.6 416 68.0
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 3.9e-164 582.0 425 67.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 5.2e-164 581.6 389 72.0
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.7e-162 576.6 387 71.6
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.2e-162 576.2 365 77.5
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.5e-160 568.9 365 74.0
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.5e-158 562.8 386 71.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.2e-158 562.4 421 66.3
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.1e-145 519.2 434 61.8
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 1.5e-142 510.4 379 65.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.4e-139 499.2 424 60.6
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.7e-139 498.4 433 57.0
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.6e-136 490.3 421 58.9
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.7e-133 478.8 434 54.4
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.1e-133 478.4 426 56.3
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 8.3e-122 441.4 432 53.2
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.4e-115 419.5 317 65.3
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.2e-112 411.0 287 69.7
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 9.2e-105 384.8 433 47.8
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-97 360.9 273 64.1
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 3.9e-95 352.8 424 45.0
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.9e-94 350.5 436 44.0
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 4.0e-92 342.8 237 69.2
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 5.8e-91 339.0 231 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 4.5e-83 312.8 381 44.4
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.0e-74 285.0 272 59.6
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.5e-65 253.8 150 79.3
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 6.7e-55 219.2 156 69.9
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-43 181.8 113 77.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.5e-38 162.5 127 62.2
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-35 154.8 95 74.7
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 4.2e-33 146.7 429 27.3
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 6.6e-26 122.9 83 69.9
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 3.5e-19 100.5 84 57.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 4.0e-15 87.0 78 55.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.6e-14 84.3 60 63.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.9e-10 70.5 196 30.6
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.9e-09 68.2 79 46.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 8.9e-07 59.3 226 23.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.4e-06 57.4 198 26.8
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 9.8e-06 55.8 43 62.8


User provided reference genes

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