Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p59360 Brassica napus HOM05D001555 ORTHO05D001616 2.5e-62 241.9 117 100.0
A09p59340 Brassica napus HOM05D001555 ORTHO05D001616 1.5e-14 83.2 73 65.8
BcaC05g25827 Brassica carinata HOM05D001555 ORTHO05D001616 2.5e-14 82.4 74 64.9
BolC5t30487H Brassica oleracea HOM05D001555 ORTHO05D001616 2.5e-14 82.4 74 64.9
BcaB03g14445 Brassica carinata HOM05D001555 ORTHO05D001616 5.6e-14 81.3 73 64.4
C05p17820 Brassica napus HOM05D001555 ORTHO05D001616 7.3e-14 80.9 74 63.5
A06p15560 Brassica napus HOM05D001555 ORTHO05D001616 1.6e-13 79.7 74 62.2
BraA06t24666Z Brassica rapa HOM05D000031 ORTHO05D001616 1.6e-13 79.7 74 62.2
BcaC07g41254 Brassica carinata HOM05D001555 ORTHO05D001616 3.6e-13 78.6 104 52.9
C08p42600 Brassica napus HOM05D001555 ORTHO05D001616 6.2e-13 77.8 98 55.1
Carub.0001s1899 Capsella rubella HOM05D001555 ORTHO05D001616 6.2e-13 77.8 74 63.5
CARHR019990 Cardamine hirsuta HOM05D001555 ORTHO05D001616 6.2e-13 77.8 74 62.2
AT1G19400 Arabidopsis thaliana HOM05D001555 ORTHO05D001616 2.3e-12 75.9 51 78.4
Thhalv10008308m.g Eutrema salsugineum HOM05D001555 ORTHO05D001616 4.0e-12 75.1 50 80.0
BcaB07g31946 Brassica carinata HOM05D001555 ORTHO05D001616 6.8e-12 74.3 51 78.4
Sp1g17300 Schrenkiella parvula HOM05D001555 ORTHO05D001616 8.9e-12 73.9 132 43.9
BraA09t41316Z Brassica rapa HOM05D001555 ORTHO05D001616 1.2e-11 73.6 116 48.3
Aa31LG4G5380 Aethionema arabicum HOM05D001555 ORTHO05D001616 2.0e-11 72.8 47 76.6
BcaC07g41256 Brassica carinata HOM05D001555 ORTHO05D001616 2.0e-11 72.8 72 61.1
AL2G35090 Arabidopsis lyrata HOM05D001555 ORTHO05D001616 3.4e-11 72.0 50 78.0
AL1G32020 Arabidopsis lyrata HOM05D001555 ORTHO05D001616 4.4e-11 71.6 51 74.5
MSTRG.24289 Avicennia marina HOM05D001555 ORTHO05D001616 7.5e-11 70.9 48 75.0
Carub.0002s2199 Capsella rubella HOM05D001555 ORTHO05D001616 7.5e-11 70.9 50 76.0
Manes.05G159800 Manihot esculenta HOM05D001555 ORTHO05D001616 7.5e-11 70.9 51 68.6
Aa31LG7G4120 Aethionema arabicum HOM05D001555 ORTHO05D001616 9.9e-11 70.5 94 44.7
BolC8t51821H Brassica oleracea HOM05D001555 ORTHO05D001616 9.9e-11 70.5 116 47.4
AUR62011325 Chenopodium quinoa HOM05D001555 ORTHO05D001616 1.3e-10 70.1 50 70.0
Prupe.1G379700 Prunus persica HOM05D001555 ORTHO05D001616 1.3e-10 70.1 48 75.0
Actinidia15327 Actinidia chinensis HOM05D001555 ORTHO05D001616 2.2e-10 69.3 51 68.6
C06p49160 Brassica napus HOM05D001555 ORTHO05D001616 2.2e-10 69.3 55 67.3
Nn5g29602 Nelumbo nucifera HOM05D001555 ORTHO05D001616 2.2e-10 69.3 55 69.1
AT1G75180 Arabidopsis thaliana HOM05D001555 ORTHO05D001616 2.9e-10 68.9 50 76.0
CAN.G1226.9 Capsicum annuum HOM05D001555 ORTHO05D001616 2.9e-10 68.9 48 75.0
Sc14g0002080 Simmondsia chinensis HOM05D001555 ORTHO05D001616 2.9e-10 68.9 49 69.4
Solyc04g080300.4 Solanum lycopersicum HOM05D001555 ORTHO05D001616 2.9e-10 68.9 48 75.0
Sopen04g033900 Solanum pennellii HOM05D001555 ORTHO05D001616 2.9e-10 68.9 48 75.0
Thecc.08G026300 Theobroma cacao HOM05D001555 ORTHO05D001616 2.9e-10 68.9 97 45.4
TWI12G1279 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 2.9e-10 68.9 74 56.8
Thhalv10018884m.g Eutrema salsugineum HOM05D001555 ORTHO05D001616 3.7e-10 68.6 50 76.0
Sp5g30330 Schrenkiella parvula HOM05D001555 ORTHO05D001616 3.7e-10 68.6 50 76.0
A07p29000 Brassica napus HOM05D001555 ORTHO05D001616 4.9e-10 68.2 51 72.5
C02p32360 Brassica napus HOM05D001555 ORTHO05D001616 4.9e-10 68.2 48 75.0
C06p32770 Brassica napus HOM05D001555 ORTHO05D001616 4.9e-10 68.2 51 72.5
BolC2t09263H Brassica oleracea HOM05D001555 ORTHO05D001616 4.9e-10 68.2 48 75.0
BolC6t38399H Brassica oleracea HOM05D001555 ORTHO05D001616 4.9e-10 68.2 51 72.5
BraA07t30540Z Brassica rapa HOM05D001555 ORTHO05D001616 4.9e-10 68.2 51 72.5
AUR62016735 Chenopodium quinoa HOM05D001555 ORTHO05D001616 4.9e-10 68.2 50 68.0
COL.COLO4_26322 Corchorus olitorius HOM05D001555 ORTHO05D001616 4.9e-10 68.2 48 75.0
Manes.18G027300 Manihot esculenta HOM05D001555 ORTHO05D001616 4.9e-10 68.2 50 72.0
BolC6t39949H Brassica oleracea HOM05D001555 ORTHO05D001616 6.4e-10 67.8 55 65.5
Oeu007018.1 Olea europaea HOM05D001555 ORTHO05D001616 6.4e-10 67.8 48 72.9
CARHR068510 Cardamine hirsuta HOM05D001555 ORTHO05D001616 8.3e-10 67.4 50 72.0
THA.LOC104798638 Tarenaya hassleriana HOM05D001555 ORTHO05D001616 8.3e-10 67.4 52 65.4
Actinidia22548 Actinidia chinensis HOM05D001555 ORTHO05D001616 1.1e-09 67.0 114 41.2
BcaB02g07014 Brassica carinata HOM05D001555 ORTHO05D001616 1.1e-09 67.0 50 74.0
BcaC08g45593 Brassica carinata HOM05D001555 ORTHO05D001616 1.1e-09 67.0 50 74.0
BcaNung06628 Brassica carinata HOM05D001555 ORTHO05D001616 1.1e-09 67.0 50 74.0
MBI16_g41746_MAGBIO Magnolia biondii HOM05D001555 ORTHO05D001616 1.1e-09 67.0 48 68.8
PGSC0003DMG400005136 Solanum tuberosum HOM05D001555 ORTHO05D001616 1.1e-09 67.0 48 72.9
CAN.G1139.14 Capsicum annuum HOM05D001555 ORTHO05D001616 1.4e-09 66.6 47 72.3
A07p40770 Brassica napus HOM05D001555 ORTHO05D001616 1.9e-09 66.2 54 64.8
BraA07t31619Z Brassica rapa HOM05D001555 ORTHO05D001616 1.9e-09 66.2 54 64.8
Duzib093G1024 Durio zibethinus HOM05D001555 ORTHO05D001616 1.9e-09 66.2 90 46.7
CSS0017756 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 2.4e-09 65.9 49 71.4
CiPaw.16G056000 Carya illinoinensis HOM05D001555 ORTHO05D001616 2.4e-09 65.9 48 70.8
TWI56G0868 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 2.4e-09 65.9 55 63.6
GSVIVG01009705001 Vitis vinifera HOM05D001555 ORTHO05D001616 2.4e-09 65.9 48 72.9
Haze_17971 Corylus avellana HOM05D001555 ORTHO05D001616 3.2e-09 65.5 55 65.5
Nitab4.5_0002296g0060 Nicotiana tabacum HOM05D001555 ORTHO05D001616 3.2e-09 65.5 48 68.8
BcaC03g15545 Brassica carinata HOM05D001555 ORTHO05D001616 4.1e-09 65.1 50 70.0
CANSAT25G0359 Cannabis sativa HOM05D001555 ORTHO05D001616 4.1e-09 65.1 59 59.3
CiPaw.15G077900 Carya illinoinensis HOM05D001555 ORTHO05D001616 4.1e-09 65.1 48 70.8
Dinv39419 Davidia involucrata HOM05D001555 ORTHO05D001616 4.1e-09 65.1 47 72.3
Nitab4.5_0006280g0030 Nicotiana tabacum HOM05D001555 ORTHO05D001616 4.1e-09 65.1 90 45.6
THA.LOC104806944 Tarenaya hassleriana HOM05D001555 ORTHO05D001616 4.1e-09 65.1 56 62.5
Dinv36078 Davidia involucrata HOM05D001555 ORTHO05D001616 5.4e-09 64.7 55 63.6
Peaxi162Scf00064g00427 Petunia axillaris HOM05D001555 ORTHO05D001616 7.1e-09 64.3 47 68.1
Ciclev10001904m.g Citrus clementina HOM05D001555 ORTHO05D001616 9.2e-09 63.9 74 55.4
MD08G1032000 Malus domestica HOM05D001555 ORTHO05D001616 9.2e-09 63.9 55 63.6
MD15G1028000 Malus domestica HOM05D001555 ORTHO05D001616 9.2e-09 63.9 55 63.6
Nitab4.5_0005373g0040 Nicotiana tabacum HOM05D001555 ORTHO05D001616 9.2e-09 63.9 48 70.8
Potri.002G260900 Populus trichocarpa HOM05D001555 ORTHO05D001616 9.2e-09 63.9 55 65.5
TAR376G0116 Trochodendron aralioides HOM05D001555 ORTHO05D001616 9.2e-09 63.9 50 68.0
TAR381G1049 Trochodendron aralioides HOM05D001555 ORTHO05D001616 9.2e-09 63.9 51 64.7
BcaB05g24887 Brassica carinata HOM05D001555 ORTHO05D001616 1.2e-08 63.5 50 68.0
BraA02t07011Z Brassica rapa HOM05D001555 ORTHO05D001616 1.2e-08 63.5 48 68.8
Migut.C00725 Erythranthe guttata HOM05D001555 ORTHO05D001616 1.2e-08 63.5 57 61.4
Potri.009G115800 Populus trichocarpa HOM05D001555 ORTHO05D001616 1.2e-08 63.5 59 57.6
Nitab4.5_0005730g0020 Nicotiana tabacum HOM05D001555 ORTHO05D001616 1.6e-08 63.2 48 66.7
Hund06232 Selenicereus undatus HOM05D001555 ORTHO05D001616 1.6e-08 63.2 50 62.0
Sopen12g031010 Solanum pennellii HOM05D001555 ORTHO05D001616 1.6e-08 63.2 47 68.1
PGSC0003DMG400015456 Solanum tuberosum HOM05D001555 ORTHO05D001616 1.6e-08 63.2 47 68.1
CSS0000270 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 2.1e-08 62.8 49 69.4
Cfa005005 Carpinus fangiana HOM05D001555 ORTHO05D001616 2.1e-08 62.8 52 61.5
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.1e-08 62.8 52 61.5
TAR628G0872 Trochodendron aralioides HOM05D001555 ORTHO05D001616 2.1e-08 62.8 55 67.3
HPP92_001872 Vanilla planifolia HOM05D001555 ORTHO05D001616 2.1e-08 62.8 47 63.8
DCAR_008756 Daucus carota HOM05D001555 ORTHO05D001616 2.7e-08 62.4 50 64.0
FvH4_2g39840 Fragaria vesca HOM05D001555 ORTHO05D001616 2.7e-08 62.4 47 63.8
Hma1.2p1_0203F.1_g086380 Hydrangea macrophylla HOM05D001555 ORTHO05D001616 3.5e-08 62.0 47 68.1
QL02p008540 Quercus lobata HOM05D001555 ORTHO05D001616 3.5e-08 62.0 74 52.7
Solyc12g089140.2 Solanum lycopersicum HOM05D001555 ORTHO05D001616 4.6e-08 61.6 47 66.0
TWI36G0036 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 4.6e-08 61.6 48 66.7
SGA_v2.0_scaffold189G40369 Striga asiatica HOM05D001555 ORTHO05D001616 7.8e-08 60.8 46 69.6
Aqoxy6G01105 Aquilegia oxysepala HOM05D001555 ORTHO05D001616 1.0e-07 60.5 48 64.6
Eucgr.F01567 Eucalyptus grandis HOM05D001555 ORTHO05D001616 1.0e-07 60.5 46 65.2
Gohir.A05G194300 Gossypium hirsutum HOM05D001555 ORTHO05D001616 1.0e-07 60.5 55 60.0
MBI16_g31220_MAGBIO Magnolia biondii HOM05D001555 ORTHO05D001616 1.0e-07 60.5 52 59.6
Oeu000773.1 Olea europaea HOM05D001555 ORTHO05D001616 1.0e-07 60.5 48 64.6
Oeu000774.1 Olea europaea HOM05D001555 ORTHO05D001616 1.0e-07 60.5 48 64.6
PSO675G7737 Papaver somniferum HOM05D001555 ORTHO05D001616 1.0e-07 60.5 47 61.7
HPP92_001860 Vanilla planifolia HOM05D001555 ORTHO05D001616 1.0e-07 60.5 43 65.1
Gohir.D05G197500 Gossypium hirsutum HOM05D001555 ORTHO05D001616 1.3e-07 60.1 55 60.0
Gorai.009G202400 Gossypium raimondii HOM05D001555 ORTHO05D001616 1.3e-07 60.1 55 60.0
PSO541G5052 Papaver somniferum HOM05D001555 ORTHO05D001616 1.3e-07 60.1 47 59.6
Sabra02G0198800 Salix brachista HOM05D001555 ORTHO05D001616 1.3e-07 60.1 55 60.0
MSTRG.22301 Avicennia marina HOM05D001555 ORTHO05D001616 1.7e-07 59.7 44 68.2
Solyc01g109610.4 Solanum lycopersicum HOM05D001555 ORTHO05D001616 1.7e-07 59.7 48 62.5
RcHm_v2.0_Chr6g0301001 Rosa chinensis HOM05D001555 ORTHO05D001616 2.3e-07 59.3 48 64.6
BcaB05g24892 Brassica carinata HOM05D001555 ORTHO05D001616 3.0e-07 58.9 32 84.4
CSS0045078 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 3.0e-07 58.9 48 66.7
MELO3C010938.2 Cucumis melo HOM05D001555 ORTHO05D001616 3.0e-07 58.9 47 66.0
Sabra09G0088900 Salix brachista HOM05D001555 ORTHO05D001616 3.0e-07 58.9 59 54.2
Atru.chr13.484 Acer truncatum HOM05D001555 ORTHO05D001616 3.9e-07 58.5 55 61.8
CiPaw.05G064300 Carya illinoinensis HOM05D001555 ORTHO05D001616 3.9e-07 58.5 52 59.6
Peaxi162Scf00417g01211 Petunia axillaris HOM05D001555 ORTHO05D001616 3.9e-07 58.5 48 66.7
Sopen01g051800 Solanum pennellii HOM05D001555 ORTHO05D001616 3.9e-07 58.5 48 60.4
PGSC0003DMG400000725 Solanum tuberosum HOM05D001555 ORTHO05D001616 3.9e-07 58.5 48 60.4
ClCG08G015130 Citrullus lanatus HOM05D001555 ORTHO05D001616 5.1e-07 58.2 47 66.0
Eucgr.I01268 Eucalyptus grandis HOM05D001555 ORTHO05D001616 5.1e-07 58.2 48 62.5
FAN15G0075 Fragaria x ananassa HOM05D001555 ORTHO05D001616 5.1e-07 58.2 48 62.5
FAN27G1850 Fragaria x ananassa HOM05D001555 ORTHO05D001616 5.1e-07 58.2 48 62.5
Hma1.2p1_0066F.1_g036430 Hydrangea macrophylla HOM05D001555 ORTHO05D001616 5.1e-07 58.2 55 56.4
Lj4A786T48 Lonicera japonica HOM05D001555 ORTHO05D001616 5.1e-07 58.2 48 60.4
Prupe.8G097300 Prunus persica HOM05D001555 ORTHO05D001616 5.1e-07 58.2 59 55.9
Sed0001114 Sechium edule HOM05D001555 ORTHO05D001616 5.1e-07 58.2 55 54.5
Sed0020320 Sechium edule HOM05D001555 ORTHO05D001616 5.1e-07 58.2 47 66.0
A02p19760 Brassica napus HOM05D001555 ORTHO05D001616 6.6e-07 57.8 47 70.2
Glyma.17G250200 Glycine max HOM05D001555 ORTHO05D001616 6.6e-07 57.8 46 67.4
Lj5g0002399 Lotus japonicus HOM05D001555 ORTHO05D001616 6.6e-07 57.8 73 47.9
Manes.17G100900 Manihot esculenta HOM05D001555 ORTHO05D001616 6.6e-07 57.8 52 53.8
CsaV3_2G028650 Cucumis sativus L. HOM05D001555 ORTHO05D001616 1.1e-06 57.0 47 63.8
vmacro21639 Vaccinium macrocarpon HOM05D001555 ORTHO05D001616 1.1e-06 57.0 45 68.9
Ciclev10028884m.g Citrus clementina HOM05D001555 ORTHO05D001616 1.5e-06 56.6 56 57.1
Dinv42066 Davidia involucrata HOM05D001555 ORTHO05D001616 1.5e-06 56.6 59 54.2
GSVIVG01031964001 Vitis vinifera HOM05D001555 ORTHO05D001616 1.5e-06 56.6 51 54.9
Atru.chr5.3013 Acer truncatum HOM05D001555 ORTHO05D001616 1.9e-06 56.2 59 54.2
FAN20G1922 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.9e-06 56.2 48 60.4
BcaB05g24890 Brassica carinata HOM05D001555 ORTHO05D001616 2.5e-06 55.8 47 66.0
Cc10_g02910 Coffea canephora HOM05D001555 ORTHO05D001616 2.5e-06 55.8 55 52.7
Lalb_Chr24g0398971 Lupinus albus HOM05D001555 ORTHO05D001616 2.5e-06 55.8 55 56.4
Oeu047778.1 Olea europaea HOM05D001555 ORTHO05D001616 2.5e-06 55.8 46 65.2
MELO3C003838.2 Cucumis melo HOM05D001555 ORTHO05D001616 3.3e-06 55.5 55 54.5
Glyma.14G075200 Glycine max HOM05D001555 ORTHO05D001616 3.3e-06 55.5 74 48.6
MSTRG.25169 Avicennia marina HOM05D001555 ORTHO05D001616 4.3e-06 55.1 49 61.2
SalBow7G1397 Salvia bowleyana HOM05D001555 ORTHO05D001616 4.3e-06 55.1 48 60.4
MD10G1076500 Malus domestica HOM05D001555 ORTHO05D001616 5.6e-06 54.7 59 50.8
QL11p043655 Quercus lobata HOM05D001555 ORTHO05D001616 5.6e-06 54.7 52 55.8
SGA_v2.0_scaffold326G48726 Striga asiatica HOM05D001555 ORTHO05D001616 5.6e-06 54.7 47 61.7
TPR.G20166 Trifolium pratense HOM05D001555 ORTHO05D001616 5.6e-06 54.7 47 59.6
CSS0011140 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 7.3e-06 54.3 56 53.6
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 7.3e-06 54.3 51 54.9
Lalb_Chr14g0369261 Lupinus albus HOM05D001555 ORTHO05D001616 7.3e-06 54.3 74 47.3
CiPaw.06G135400 Carya illinoinensis HOM05D001555 ORTHO05D001616 9.5e-06 53.9 71 42.3
Sc02g0006130 Simmondsia chinensis HOM05D001555 ORTHO05D001616 9.5e-06 53.9 47 57.4
Zm00001eb059220 Zea mays HOM05D001555 ORTHO05D001616 9.5e-06 53.9 48 60.4


User provided reference genes

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