Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 1.2e-26 122.5 63 100.0
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 1.2e-26 122.5 63 100.0
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 6.3e-20 100.1 57 89.5
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 6.3e-20 100.1 57 89.5
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 1.1e-19 99.4 57 87.7
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 1.2e-18 95.9 57 82.5
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 8.5e-17 89.7 60 75.0
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 9.3e-16 86.3 67 68.7
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 4.6e-15 84.0 64 68.8
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 1.3e-14 82.4 57 71.9
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 1.3e-14 82.4 57 71.9
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 6.7e-14 80.1 67 64.2
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 1.6e-12 75.5 59 66.1
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 2.2e-12 75.1 52 71.2
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 2.8e-12 74.7 63 66.7
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 3.7e-12 74.3 57 71.9
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 4.8e-12 73.9 57 68.4
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 6.3e-12 73.6 64 62.5
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 8.2e-12 73.2 57 66.7
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 1.1e-11 72.8 57 68.4
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 1.5e-10 68.9 54 63.0
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 2.6e-10 68.2 54 63.0
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 5.9e-10 67.0 56 60.7
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 1.0e-09 66.2 44 77.3
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 1.3e-09 65.9 44 70.5
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 1.3e-09 65.9 52 61.5
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 1.3e-09 65.9 59 64.4
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 1.7e-09 65.5 54 61.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 1.7e-09 65.5 44 72.7
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 2.2e-09 65.1 55 65.5
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 2.2e-09 65.1 54 64.8
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 2.2e-09 65.1 56 69.6
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 2.9e-09 64.7 49 69.4
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 2.9e-09 64.7 56 64.3
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 2.9e-09 64.7 56 62.5
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 2.9e-09 64.7 56 64.3
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 2.9e-09 64.7 59 62.7
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 3.8e-09 64.3 35 85.7
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 5.0e-09 63.9 55 61.8
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 5.0e-09 63.9 57 61.4
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 5.0e-09 63.9 45 73.3
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 5.0e-09 63.9 45 73.3
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 5.0e-09 63.9 45 73.3
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 5.0e-09 63.9 54 66.7
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 5.0e-09 63.9 40 75.0
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 6.5e-09 63.5 38 76.3
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 6.5e-09 63.5 58 58.6
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 6.5e-09 63.5 37 78.4
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 6.5e-09 63.5 41 75.6
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 6.5e-09 63.5 38 78.9
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 6.5e-09 63.5 38 78.9
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 8.5e-09 63.2 39 69.2
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 8.5e-09 63.2 35 85.7
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 8.5e-09 63.2 35 85.7
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 8.5e-09 63.2 57 61.4
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 8.5e-09 63.2 56 60.7
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 8.5e-09 63.2 55 63.6
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 1.1e-08 62.8 56 62.5
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 1.1e-08 62.8 55 65.5
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 1.1e-08 62.8 54 59.3
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 1.4e-08 62.4 42 71.4
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 1.9e-08 62.0 49 63.3
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 1.9e-08 62.0 61 59.0
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 2.5e-08 61.6 35 80.0
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 2.5e-08 61.6 55 61.8
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 3.2e-08 61.2 59 59.3
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 4.2e-08 60.8 35 82.9
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 4.2e-08 60.8 38 76.3
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 5.5e-08 60.5 38 76.3
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 9.4e-08 59.7 54 63.0
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 1.2e-07 59.3 56 60.7
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 1.2e-07 59.3 34 79.4
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 1.6e-07 58.9 57 61.4
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.6e-07 58.9 42 69.0
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.6e-07 58.9 42 69.0
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.6e-07 58.9 42 69.0
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.6e-07 58.9 42 69.0
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 1.6e-07 58.9 56 57.1
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 2.1e-07 58.5 39 71.8
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 2.1e-07 58.5 57 61.4
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.1e-07 58.5 38 73.7
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.1e-07 58.5 38 73.7
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 2.7e-07 58.2 42 64.3
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 2.7e-07 58.2 43 69.8
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 2.7e-07 58.2 36 77.8
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 2.7e-07 58.2 55 56.4
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 2.7e-07 58.2 39 64.1
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 3.6e-07 57.8 37 75.7
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 3.6e-07 57.8 40 72.5
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 6.1e-07 57.0 60 56.7
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 1.0e-06 56.2 37 70.3
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 1.4e-06 55.8 39 69.2
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 2.3e-06 55.1 58 56.9
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 2.3e-06 55.1 43 60.5
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 8.8e-06 53.1 39 59.0


User provided reference genes

Program Settings