Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 3.5e-115 418.3 214 100.0
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 2.3e-114 415.6 214 99.5
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.1e-108 396.7 215 95.3
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.1e-108 396.7 215 95.3
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 5.3e-95 351.3 216 87.0
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 5.0e-85 318.2 217 80.6
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 8.5e-85 317.4 216 82.4
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 1.1e-84 317.0 203 81.8
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 2.2e-80 302.8 215 80.5
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 2.6e-78 295.8 218 79.4
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 2.7e-59 232.6 212 63.7
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.2e-43 180.6 206 51.5
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 2.3e-42 176.4 147 59.9
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 5.2e-42 175.3 181 54.1
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 8.9e-42 174.5 142 59.9
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.2e-41 174.1 163 54.6
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 5.7e-41 171.8 180 49.4
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 9.8e-41 171.0 140 57.1
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 9.8e-41 171.0 228 45.6
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.3e-40 170.6 150 62.0
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.7e-40 170.2 120 68.3
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 2.2e-40 169.9 136 63.2
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 2.9e-40 169.5 157 57.3
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 2.9e-40 169.5 126 64.3
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.9e-40 169.5 180 50.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 4.9e-40 168.7 138 63.0
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 4.9e-40 168.7 203 49.3
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 4.9e-40 168.7 135 62.2
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 6.4e-40 168.3 126 63.5
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 8.3e-40 167.9 135 64.4
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 1.4e-39 167.2 148 58.8
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.8e-39 166.8 158 57.0
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.8e-39 166.8 182 49.5
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 3.2e-39 166.0 132 60.6
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 4.1e-39 165.6 175 49.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 4.1e-39 165.6 211 48.8
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.1e-39 165.6 143 56.6
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.1e-39 165.6 163 52.1
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 4.1e-39 165.6 163 52.1
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 4.1e-39 165.6 216 47.7
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 5.4e-39 165.2 165 55.2
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 7.0e-39 164.9 138 60.1
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 7.0e-39 164.9 115 67.0
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 7.0e-39 164.9 115 67.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 7.0e-39 164.9 124 66.1
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 7.0e-39 164.9 124 66.1
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.2e-38 164.1 149 55.7
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.7e-38 162.9 132 61.4
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 3.5e-38 162.5 208 44.2
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 3.5e-38 162.5 126 64.3
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 4.6e-38 162.2 161 53.4
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 4.6e-38 162.2 132 64.4
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 5.9e-38 161.8 195 49.2
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 5.9e-38 161.8 152 51.3
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 5.9e-38 161.8 132 59.8
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 5.9e-38 161.8 214 47.2
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.3e-37 160.6 152 54.6
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 1.7e-37 160.2 201 47.8
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 2.3e-37 159.8 212 45.8
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 2.3e-37 159.8 212 45.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 8.6e-37 157.9 160 53.8
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 8.6e-37 157.9 150 50.7
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 2.5e-36 156.4 133 61.7
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 4.3e-36 155.6 153 50.3
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 7.3e-36 154.8 201 46.8
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 9.5e-36 154.5 148 53.4
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 2.1e-35 153.3 115 67.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 2.8e-35 152.9 214 46.7
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.6e-35 152.5 157 51.0
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 4.7e-35 152.1 133 57.9
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 4.7e-35 152.1 214 44.4
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 8.0e-35 151.4 214 44.9
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.4e-34 150.6 143 58.0
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 3.1e-34 149.4 121 61.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 3.1e-34 149.4 143 55.9
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.5e-33 147.1 154 50.0
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 2.0e-33 146.7 149 51.7
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.0e-33 146.7 157 47.8
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 5.8e-33 145.2 109 63.3
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.7e-32 143.7 130 52.3
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 3.7e-32 142.5 207 44.0
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 4.9e-32 142.1 111 58.6
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 8.3e-32 141.4 165 47.9
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 8.3e-32 141.4 182 44.5
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 8.3e-32 141.4 129 54.3
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.9e-31 140.2 130 53.8
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 3.2e-31 139.4 141 48.9
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 9.2e-31 137.9 99 68.7
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.6e-30 137.1 161 42.9
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 2.7e-30 136.3 146 43.8
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 1.3e-29 134.0 100 62.0
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 3.9e-29 132.5 99 60.6
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 1.5e-25 120.6 132 41.7
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 8.3e-24 114.8 156 47.4
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 8.3e-24 114.8 204 39.2
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.4e-23 114.0 124 49.2
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.9e-23 113.6 204 38.2
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.9e-23 113.6 97 59.8
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 5.4e-23 112.1 150 44.7
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.1e-20 104.4 130 44.6
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.5e-20 104.0 129 45.0
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 9.5e-20 101.3 185 40.5
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 4.7e-19 99.0 133 40.6
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 8.9e-18 94.7 140 37.9
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.2e-17 94.4 126 40.5
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 7.6e-17 91.7 114 44.7
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 2.2e-16 90.1 73 58.9
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 3.2e-15 86.3 144 36.8
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 1.5e-12 77.4 108 37.0
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 2.2e-08 63.5 56 55.4


User provided reference genes

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