Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p56920 Brassica napus HOM05D000988 ORTHO05D000724 1.1e-74 283.5 174 100.0
BraA09t41084Z Brassica rapa HOM05D000988 ORTHO05D000724 1.1e-74 283.5 174 100.0
BolC8t51560H Brassica oleracea HOM05D000988 ORTHO05D000724 4.1e-61 238.4 177 87.6
C08p39880 Brassica napus HOM05D000988 ORTHO05D000724 1.4e-56 223.4 177 84.7
BcaC07g40986 Brassica carinata HOM05D000988 ORTHO05D000724 5.1e-56 221.5 177 83.6
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 2.2e-43 179.5 196 61.2
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 4.4e-39 165.2 202 60.4
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 1.2e-36 157.1 176 56.8
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 2.0e-36 156.4 188 56.4
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 5.9e-36 154.8 191 55.0
Aa31LG7G13560 Aethionema arabicum HOM05D000988 ORTHO05D000724 5.9e-28 128.3 221 46.2
THA.LOC104819843 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 1.5e-18 97.1 197 38.1
Carub.0004s0263 Capsella rubella HOM05D000988 ORTHO05D000724 1.2e-15 87.4 77 61.0
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 1.5e-10 70.5 128 40.6
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 2.5e-10 69.7 71 47.9
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 7.3e-10 68.2 177 33.3
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 1.2e-09 67.4 178 30.9
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 2.1e-09 66.6 118 37.3
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.1e-09 66.6 186 29.6
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 2.8e-09 66.2 58 51.7
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 6.2e-09 65.1 178 30.3
MBI06_g24646_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 6.2e-09 65.1 51 62.7
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 6.2e-09 65.1 173 32.4
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 8.0e-09 64.7 176 29.0
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 8.0e-09 64.7 55 50.9
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.1e-08 64.3 125 32.0
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 1.4e-08 63.9 57 54.4
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 1.8e-08 63.5 100 37.0
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 2.3e-08 63.2 122 36.9
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 2.3e-08 63.2 125 32.8
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.1e-08 62.8 58 46.6
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.1e-08 62.8 58 46.6
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 4.0e-08 62.4 125 36.8
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 4.0e-08 62.4 51 54.9
PGSC0003DMG400015770 Solanum tuberosum HOM05D000988 ORTHO05D000724 4.0e-08 62.4 43 60.5
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 6.8e-08 61.6 76 38.2
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 6.8e-08 61.6 55 49.1
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 6.8e-08 61.6 55 49.1
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 8.9e-08 61.2 169 30.8
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 8.9e-08 61.2 61 50.8
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 8.9e-08 61.2 164 30.5
Nitab4.5_0001064g0030 Nicotiana tabacum HOM05D000988 ORTHO05D000724 8.9e-08 61.2 96 42.7
unitig_32.g11764 Utricularia gibba HOM05D000988 ORTHO05D000724 8.9e-08 61.2 99 41.4
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 1.2e-07 60.8 125 32.0
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 1.5e-07 60.5 120 40.0
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.5e-07 60.5 55 47.3
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.5e-07 60.5 165 29.7
Peaxi162Scf00450g00739 Petunia axillaris HOM05D000988 ORTHO05D000724 1.5e-07 60.5 92 34.8
Ah.02g124190 Amaranthus hybridus HOM05D000988 ORTHO05D000724 2.0e-07 60.1 44 61.4
arahy.Tifrunner.gnm1.ann1.C2Y005 Arachis hypogaea HOM05D000988 ORTHO05D000724 2.6e-07 59.7 122 32.8
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 2.6e-07 59.7 128 35.2
Oeu021555.1 Olea europaea HOM05D000988 ORTHO05D000724 2.6e-07 59.7 54 46.3
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 3.4e-07 59.3 121 33.1
Haze_15419 Corylus avellana HOM05D000988 ORTHO05D000724 3.4e-07 59.3 53 54.7
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 3.4e-07 59.3 52 50.0
SGA_v2.0_scaffold204G41577 Striga asiatica HOM05D000988 ORTHO05D000724 3.4e-07 59.3 56 46.4
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 4.4e-07 58.9 56 46.4
Nitab4.5_0001034g0100 Nicotiana tabacum HOM05D000988 ORTHO05D000724 4.4e-07 58.9 54 48.1
GSVIVG01031765001 Vitis vinifera HOM05D000988 ORTHO05D000724 4.4e-07 58.9 61 45.9
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 5.8e-07 58.5 58 48.3
FAN15G2453 Fragaria x ananassa HOM05D000988 ORTHO05D000724 5.8e-07 58.5 59 49.2
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 5.8e-07 58.5 51 51.0
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 5.8e-07 58.5 50 48.0
A06p03560 Brassica napus HOM05D000988 ORTHO05D000724 7.5e-07 58.2 58 46.6
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 7.5e-07 58.2 55 45.5
FAN27G3463 Fragaria x ananassa HOM05D000988 ORTHO05D000724 7.5e-07 58.2 59 49.2
Oeu018223.2 Olea europaea HOM05D000988 ORTHO05D000724 7.5e-07 58.2 80 43.8
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 7.5e-07 58.2 115 36.5
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 9.8e-07 57.8 53 54.7
CiPaw.05G052300 Carya illinoinensis HOM05D000988 ORTHO05D000724 9.8e-07 57.8 51 51.0
Eucgr.G01461 Eucalyptus grandis HOM05D000988 ORTHO05D000724 9.8e-07 57.8 62 43.5
FAN20G2007 Fragaria x ananassa HOM05D000988 ORTHO05D000724 9.8e-07 57.8 59 49.2
Glyma.11G056700 Glycine max HOM05D000988 ORTHO05D000724 9.8e-07 57.8 125 30.4
Lalb_Chr09g0323111 Lupinus albus HOM05D000988 ORTHO05D000724 9.8e-07 57.8 169 26.6
Lalb_Chr16g0378471 Lupinus albus HOM05D000988 ORTHO05D000724 9.8e-07 57.8 57 43.9
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 9.8e-07 57.8 59 44.1
TAR381G0922 Trochodendron aralioides HOM05D000988 ORTHO05D000724 9.8e-07 57.8 48 58.3
MSTRG.16754 Avicennia marina HOM05D000988 ORTHO05D000724 1.3e-06 57.4 50 50.0
CANSAT01G1117 Cannabis sativa HOM05D000988 ORTHO05D000724 1.3e-06 57.4 127 32.3
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 1.3e-06 57.4 125 32.0
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.3e-06 57.4 55 45.5
HanXRQChr09g0263531 Helianthus annuus HOM05D000988 ORTHO05D000724 1.3e-06 57.4 56 44.6
Oeu004831.1 Olea europaea HOM05D000988 ORTHO05D000724 1.3e-06 57.4 48 54.2
Peaxi162Scf00685g00069 Petunia axillaris HOM05D000988 ORTHO05D000724 1.3e-06 57.4 47 53.2
RcHm_v2.0_Chr6g0258231 Rosa chinensis HOM05D000988 ORTHO05D000724 1.3e-06 57.4 59 47.5
Carub.0003s2522 Capsella rubella HOM05D000988 ORTHO05D000724 1.7e-06 57.0 57 49.1
CsaV3_7G025920 Cucumis sativus L. HOM05D000988 ORTHO05D000724 1.7e-06 57.0 46 56.5
Rhsim10G0118800 Rhododendron simsii HOM05D000988 ORTHO05D000724 1.7e-06 57.0 58 46.6
Hund13559 Selenicereus undatus HOM05D000988 ORTHO05D000724 1.7e-06 57.0 52 53.8
TAR376G0444 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.7e-06 57.0 181 30.4
vmacro05330 Vaccinium macrocarpon HOM05D000988 ORTHO05D000724 1.7e-06 57.0 68 47.1
MSTRG.2889 Avicennia marina HOM05D000988 ORTHO05D000724 2.2e-06 56.6 50 46.0
DCAR_022035 Daucus carota HOM05D000988 ORTHO05D000724 2.2e-06 56.6 56 46.4
Duzib147G1455 Durio zibethinus HOM05D000988 ORTHO05D000724 2.2e-06 56.6 171 29.2
Eucgr.H02008 Eucalyptus grandis HOM05D000988 ORTHO05D000724 2.2e-06 56.6 57 49.1
FvH4_2g06360 Fragaria vesca HOM05D000988 ORTHO05D000724 2.2e-06 56.6 59 47.5
FAN24G0804 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.2e-06 56.6 59 47.5
HanXRQChr16g0501321 Helianthus annuus HOM05D000988 ORTHO05D000724 2.2e-06 56.6 57 49.1
Phvul.003G295400 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 2.2e-06 56.6 58 51.7
Actinidia35872 Actinidia chinensis HOM05D000988 ORTHO05D000724 2.9e-06 56.2 44 59.1
CsaV3_3G029910 Cucumis sativus L. HOM05D000988 ORTHO05D000724 2.9e-06 56.2 80 40.0
Gohir.D10G096200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.9e-06 56.2 161 28.6
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 2.9e-06 56.2 45 57.8
Solyc09g091780.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 2.9e-06 56.2 47 57.4
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 2.9e-06 56.2 182 27.5
Sopen09g034670 Solanum pennellii HOM05D000988 ORTHO05D000724 2.9e-06 56.2 47 57.4
HPP92_004079 Vanilla planifolia HOM05D000988 ORTHO05D000724 2.9e-06 56.2 44 56.8
EL10Ac6g15762 Beta vulgaris HOM05D000988 ORTHO05D000724 3.7e-06 55.8 92 42.4
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 3.7e-06 55.8 89 32.6
MELO3C021014.2 Cucumis melo HOM05D000988 ORTHO05D000724 3.7e-06 55.8 46 54.3
Thhalv10010715m.g Eutrema salsugineum HOM05D010645 ORTHO05D000724 3.7e-06 55.8 59 49.2
Prupe.7G135000 Prunus persica HOM05D000988 ORTHO05D000724 3.7e-06 55.8 63 41.3
Rhsim11G0166900 Rhododendron simsii HOM05D000988 ORTHO05D000724 3.7e-06 55.8 44 54.5
HPP92_004111 Vanilla planifolia HOM05D000988 ORTHO05D000724 3.7e-06 55.8 44 54.5
Actinidia11410 Actinidia chinensis HOM05D000988 ORTHO05D000724 4.9e-06 55.5 174 30.5
arahy.Tifrunner.gnm1.ann1.CAW15G Arachis hypogaea HOM05D000988 ORTHO05D000724 4.9e-06 55.5 122 32.8
MSTRG.15394 Avicennia marina HOM05D000988 ORTHO05D000724 4.9e-06 55.5 55 45.5
BraA06t23564Z Brassica rapa HOM05D000988 ORTHO05D000724 4.9e-06 55.5 96 36.5
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 4.9e-06 55.5 51 49.0
Ciclev10029306m.g Citrus clementina HOM05D000988 ORTHO05D000724 4.9e-06 55.5 113 34.5
Migut.H00444 Erythranthe guttata HOM05D000988 ORTHO05D000724 4.9e-06 55.5 56 44.6
Gorai.011G105400 Gossypium raimondii HOM05D000988 ORTHO05D000724 4.9e-06 55.5 160 27.5
HanXRQChr03g0082701 Helianthus annuus HOM05D000988 ORTHO05D000724 4.9e-06 55.5 97 37.1
HanXRQChr15g0473711 Helianthus annuus HOM05D000988 ORTHO05D000724 4.9e-06 55.5 42 57.1
Lsat_1_v5_gn_2_45361 Lactuca sativa HOM05D000988 ORTHO05D000724 4.9e-06 55.5 47 57.4
PSO170G3547 Papaver somniferum HOM05D000988 ORTHO05D000724 4.9e-06 55.5 98 36.7
Potri.005G137500 Populus trichocarpa HOM05D000988 ORTHO05D000724 4.9e-06 55.5 41 58.5
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 4.9e-06 55.5 117 31.6
Sabra05G0109800 Salix brachista HOM05D000988 ORTHO05D000724 4.9e-06 55.5 43 58.1
HPP92_027221 Vanilla planifolia HOM05D000988 ORTHO05D000724 4.9e-06 55.5 45 51.1
BcaC07g39524 Brassica carinata HOM05D010645 ORTHO05D000724 6.4e-06 55.1 44 59.1
C08p25700 Brassica napus HOM05D010645 ORTHO05D000724 6.4e-06 55.1 95 36.8
CAN.G1041.8 Capsicum annuum HOM05D000988 ORTHO05D000724 6.4e-06 55.1 50 56.0
DCAR_024480 Daucus carota HOM05D000988 ORTHO05D000724 6.4e-06 55.1 44 63.6
ECA238G1779 Erigeron canadensis HOM05D000988 ORTHO05D000724 6.4e-06 55.1 50 54.0
Gohir.D08G212100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 6.4e-06 55.1 44 54.5
Gorai.004G225500 Gossypium raimondii HOM05D000988 ORTHO05D000724 6.4e-06 55.1 44 54.5
Rhsim08G0101500 Rhododendron simsii HOM05D000988 ORTHO05D000724 6.4e-06 55.1 171 28.1
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 6.4e-06 55.1 176 29.5
arahy.Tifrunner.gnm1.ann1.U4YTZL Arachis hypogaea HOM05D000988 ORTHO05D000724 8.3e-06 54.7 125 35.2
Ca_19505_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 8.3e-06 54.7 51 43.1
Solyc03g044480.3 Solanum lycopersicum HOM05D040538 ORTHO05D037719 8.3e-06 54.7 44 50.0
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 8.3e-06 54.7 134 31.3


User provided reference genes

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