Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 4.5e-166 587.8 285 100.0
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 4.9e-165 584.3 284 99.6
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 1.8e-159 565.8 285 96.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 5.3e-159 564.3 284 96.5
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 7.6e-158 560.5 285 95.1
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.8e-151 539.3 287 92.7
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 1.9e-148 529.3 283 89.0
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 6.1e-147 524.2 281 87.9
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 2.3e-146 522.3 285 87.4
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 8.8e-146 520.4 285 88.1
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.1e-145 520.0 286 87.1
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 5.7e-145 517.7 285 87.0
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 2.8e-144 515.4 283 85.5
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 8.2e-144 513.8 290 86.6
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 8.2e-144 513.8 291 86.3
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.8e-143 512.7 296 84.8
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.1e-143 511.9 285 87.4
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.6e-142 508.8 282 86.2
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 1.4e-138 496.5 283 80.9
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 1.8e-138 496.1 283 83.4
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 6.7e-130 467.6 275 80.0
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 3.3e-129 465.3 275 78.9
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 5.7e-129 464.5 279 78.1
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 1.7e-128 463.0 281 75.8
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 2.8e-128 462.2 273 77.3
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 4.8e-128 461.5 279 78.1
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 6.3e-128 461.1 275 78.2
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 8.2e-128 460.7 279 77.1
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.1e-127 460.3 275 78.2
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.8e-127 459.5 273 79.1
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 1.8e-127 459.5 279 77.8
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 9.1e-127 457.2 274 74.8
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 1.2e-126 456.8 285 75.8
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.2e-126 456.8 284 76.8
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.6e-126 456.4 278 76.6
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.6e-126 456.4 282 76.2
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.6e-126 456.4 283 75.3
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 2.0e-126 456.1 277 77.6
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 4.5e-126 454.9 280 75.4
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 4.5e-126 454.9 275 78.2
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 5.9e-126 454.5 280 76.1
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 7.7e-126 454.1 282 75.2
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 7.7e-126 454.1 273 78.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.0e-125 453.8 281 75.8
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.3e-125 453.4 278 77.0
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.7e-125 453.0 276 77.2
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.7e-125 453.0 277 77.3
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.2e-125 452.6 277 77.3
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 3.8e-125 451.8 273 74.0
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 3.8e-125 451.8 286 74.1
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 3.8e-125 451.8 282 75.9
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 5.0e-125 451.4 281 74.7
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 5.0e-125 451.4 273 78.4
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.5e-125 451.1 275 76.4
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 6.5e-125 451.1 280 75.0
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 6.5e-125 451.1 308 70.5
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 8.5e-125 450.7 301 71.8
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 8.5e-125 450.7 282 77.3
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 8.5e-125 450.7 275 77.1
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 8.5e-125 450.7 282 76.6
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.5e-124 449.9 285 72.6
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.9e-124 449.5 285 72.3
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 1.9e-124 449.5 279 74.2
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.2e-124 448.7 271 76.0
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 7.2e-124 447.6 274 73.7
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 9.4e-124 447.2 276 73.9
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 9.4e-124 447.2 274 73.4
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 9.4e-124 447.2 280 76.1
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 1.2e-123 446.8 306 71.2
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 1.2e-123 446.8 277 76.5
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 2.7e-123 445.7 273 74.0
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 3.6e-123 445.3 281 73.0
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 3.6e-123 445.3 281 73.3
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 3.6e-123 445.3 274 73.4
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.0e-122 443.7 283 74.2
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.0e-122 443.7 283 74.2
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.4e-122 443.4 273 76.6
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 2.3e-122 442.6 283 74.2
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 6.8e-122 441.0 279 74.6
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.2e-121 440.3 273 75.8
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 6.3e-120 434.5 281 73.3
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.1e-119 433.7 281 73.3
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.4e-119 433.3 279 73.5
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 7.0e-119 431.0 274 75.5
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.2e-118 430.3 280 72.9
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 2.7e-118 429.1 279 73.5
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 3.8e-117 425.2 282 72.0
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 5.0e-117 424.9 254 77.6
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 5.0e-117 424.9 277 72.6
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 6.5e-117 424.5 283 71.0
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 6.5e-117 424.5 282 71.6
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.5e-116 423.3 303 71.6
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.5e-116 423.3 318 64.8
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.1e-115 419.5 282 70.2
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 3.6e-115 418.7 273 70.7
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.8e-114 416.4 300 68.0
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 6.8e-114 414.5 274 71.5
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.2e-113 413.7 316 63.9
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 3.4e-113 412.1 277 70.0
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 3.1e-111 405.6 273 70.7
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 7.0e-111 404.4 270 70.7
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 3.5e-110 402.1 273 70.0
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 4.5e-110 401.7 215 87.0
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.9e-109 399.1 303 64.7
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.5e-108 396.7 276 68.1
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 5.6e-108 394.8 274 67.2
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 4.0e-106 388.7 237 76.4
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.2e-102 377.1 241 73.4
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 3.5e-102 375.6 356 55.6
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 5.6e-100 368.2 214 81.8
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 8.9e-98 360.9 282 64.2
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.4e-95 353.6 221 74.7
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 2.5e-92 342.8 279 57.0
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.2e-89 334.0 199 77.9
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.0e-85 320.9 190 77.9
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 1.9e-84 316.6 280 53.9
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 5.6e-84 315.1 274 55.5
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.7e-83 312.0 225 67.1
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.1e-78 296.6 227 64.3
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 2.7e-78 296.2 189 73.0
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 2.7e-78 296.2 189 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 4.9e-72 275.4 226 58.0
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.7e-70 269.6 284 48.6
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 4.9e-64 248.8 294 48.6
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 6.7e-61 238.4 156 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 8.1e-59 231.5 186 59.1
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 3.1e-58 229.6 151 66.9
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 3.2e-55 219.5 131 74.8
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 7.1e-55 218.4 266 47.7
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.2e-54 217.6 201 50.2
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.1e-42 177.9 241 43.6
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 5.5e-39 165.6 274 38.3
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.7e-38 163.3 101 77.2
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 2.2e-35 153.7 213 39.9
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 6.3e-27 125.6 112 56.2
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 3.1e-26 123.2 83 67.5
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 8.0e-14 82.0 67 59.7
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.8e-13 80.9 47 78.7
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 2.0e-12 77.4 45 77.8


User provided reference genes

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