Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 5.5e-177 624.4 364 100.0
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 4.8e-173 611.3 366 98.4
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 1.7e-149 533.1 372 85.5
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 6.6e-130 468.0 378 79.4
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 3.4e-126 455.7 378 79.4
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 3.2e-108 396.0 381 65.1
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 1.0e-93 347.8 387 58.7
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 6.9e-87 325.1 393 54.5
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 9.7e-81 304.7 281 68.3
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 4.8e-80 302.4 383 54.6
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 1.1e-55 221.5 134 86.6
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 3.5e-38 163.3 251 52.6
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 1.7e-29 134.4 381 32.5
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 5.2e-18 96.3 128 41.4
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 6.8e-18 95.9 135 39.3
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 1.2e-17 95.1 130 41.5
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 1.5e-17 94.7 131 36.6
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.0e-17 94.4 135 40.7
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 2.0e-17 94.4 135 37.0
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.6e-17 94.0 135 40.7
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 9.8e-17 92.0 131 36.6
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 1.3e-16 91.7 140 40.0
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 6.4e-16 89.4 180 35.6
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 1.1e-15 88.6 175 36.0
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.1e-15 88.6 175 36.0
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 1.4e-15 88.2 135 35.6
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 1.9e-15 87.8 135 35.6
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 4.1e-15 86.7 190 34.2
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 9.2e-15 85.5 175 36.0
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 1.2e-14 85.1 178 34.8
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 2.7e-14 84.0 138 35.5
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 4.6e-14 83.2 172 33.7
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 6.0e-14 82.8 176 33.0
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 3.0e-13 80.5 128 35.2
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 5.1e-13 79.7 124 36.3
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 5.1e-13 79.7 182 33.5
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 6.6e-13 79.3 140 29.3
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 1.5e-12 78.2 133 35.3
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 2.5e-12 77.4 194 30.9
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 3.3e-12 77.0 172 32.6
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 9.5e-12 75.5 181 30.4
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 1.8e-10 71.2 133 36.1
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 1.8e-10 71.2 178 32.0
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 5.2e-10 69.7 160 31.9
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 5.2e-10 69.7 143 34.3
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 5.2e-10 69.7 143 34.3
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 8.9e-10 68.9 176 29.5
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 2.6e-09 67.4 71 43.7
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 2.6e-09 67.4 144 31.9
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 3.4e-09 67.0 145 32.4
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 6.4e-08 62.8 76 39.5
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 1.4e-07 61.6 329 27.1
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.4e-07 61.6 163 27.0


User provided reference genes

Program Settings