Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 2.0e-281 971.8 521 100.0
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 1.4e-258 896.0 515 92.8
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 6.3e-251 870.5 496 93.8
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.8e-245 852.4 496 91.9
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 6.4e-219 764.2 494 85.0
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.5e-204 716.5 499 79.4
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 3.8e-203 711.8 505 80.8
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.4e-202 709.1 500 79.4
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.4e-202 709.1 498 79.3
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 4.2e-202 708.4 500 79.4
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.0e-200 703.7 500 79.0
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 1.4e-170 603.6 580 64.7
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.1e-154 550.8 494 64.2
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.7e-153 545.4 488 63.5
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.8e-144 516.9 488 62.1
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 2.6e-140 503.1 489 60.1
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 9.4e-138 494.6 488 58.4
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 1.8e-136 490.3 494 59.5
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.2e-136 488.8 496 58.7
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 5.2e-136 488.8 493 59.4
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 9.7e-135 484.6 493 59.2
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.8e-134 483.0 495 59.4
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 3.7e-134 482.6 491 59.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.2e-132 477.6 496 58.9
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 4.5e-132 475.7 489 58.1
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 8.5e-131 471.5 494 55.9
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 7.2e-130 468.4 490 57.8
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 9.4e-130 468.0 458 59.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.2e-129 467.6 499 56.3
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 8.0e-129 464.9 490 57.8
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.3e-128 463.4 493 57.2
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.0e-128 463.0 493 56.2
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 4.0e-128 462.6 491 55.8
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.2e-128 462.2 493 56.0
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.8e-128 461.8 493 56.0
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.2e-127 461.1 493 56.0
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 5.7e-127 458.8 498 55.4
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 7.5e-127 458.4 493 55.6
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 1.8e-125 453.8 498 54.6
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 4.1e-125 452.6 494 54.9
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.1e-125 452.6 494 53.4
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-124 451.1 493 55.2
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.6e-124 450.7 490 55.7
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 5.9e-124 448.7 488 54.9
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.9e-123 446.4 496 56.0
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.1e-122 444.5 494 55.3
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.9e-122 443.7 488 53.5
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.9e-122 443.7 493 53.8
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.5e-122 443.4 497 55.1
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 9.5e-122 441.4 490 53.7
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.2e-121 441.0 490 53.5
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 2.1e-121 440.3 514 53.7
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.1e-121 440.3 495 53.7
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 2.8e-121 439.9 498 54.6
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 4.7e-121 439.1 493 53.3
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.0e-120 438.0 494 54.0
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.4e-120 437.6 505 54.5
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.4e-120 437.6 496 54.6
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 2.3e-120 436.8 511 53.0
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.0e-120 436.0 490 54.9
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.5e-119 434.1 495 55.4
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 2.6e-119 433.3 511 53.0
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 7.5e-119 431.8 514 51.2
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.1e-117 427.9 496 54.2
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 1.8e-117 427.2 498 53.8
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 5.9e-116 422.2 489 52.6
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.6e-114 415.6 547 47.9
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 4.0e-112 409.5 495 50.5
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 5.2e-112 409.1 488 51.0
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 6.8e-112 408.7 454 55.7
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 8.9e-112 408.3 512 50.0
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 3.7e-110 402.9 541 49.2
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.2e-109 399.8 553 48.1
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 3.2e-109 399.8 502 51.6
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 3.2e-109 399.8 523 47.6
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 7.0e-109 398.7 523 48.6
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 9.2e-109 398.3 567 46.6
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 4.6e-108 396.0 230 90.9
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 6.0e-108 395.6 526 48.1
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.3e-107 394.4 230 90.4
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.3e-107 394.4 509 49.7
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 3.9e-107 392.9 492 50.0
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.1e-106 391.3 567 46.2
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.9e-106 390.6 498 49.8
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 5.6e-106 389.0 494 49.8
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.2e-105 387.9 506 51.4
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.6e-105 387.5 529 47.6
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 2.8e-105 386.7 492 50.0
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 4.7e-105 386.0 492 49.2
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 4.0e-104 382.9 515 47.6
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 6.8e-104 382.1 491 50.3
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 9.8e-103 378.3 383 57.7
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 2.2e-102 377.1 441 52.8
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.2e-100 371.3 509 47.2
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.6e-100 370.9 221 89.6
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.3e-99 367.9 503 49.5
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.7e-99 367.5 498 47.4
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.1e-98 364.8 363 57.9
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.1e-98 364.8 363 57.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 8.1e-97 358.6 509 47.5
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 5.2e-96 355.9 569 45.3
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.9e-94 350.1 438 51.8
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.6e-89 334.3 511 47.9
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 3.6e-89 333.2 447 47.2
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 4.7e-89 332.8 551 41.7
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.2e-87 328.2 537 42.8
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.0e-87 327.4 531 42.4
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.7e-83 314.3 339 54.6
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.6e-73 280.0 345 54.2
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 6.9e-72 275.8 263 59.7
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.1e-64 251.9 204 67.2
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 5.5e-61 239.6 274 52.9
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.3e-57 228.4 174 65.5
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.9e-53 214.5 129 89.1
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 5.5e-53 213.0 444 36.3
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.6e-47 194.1 357 40.1
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 4.2e-45 186.8 230 52.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 5.1e-43 179.9 459 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.1e-42 178.7 444 34.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.3e-41 175.3 541 30.9
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.3e-35 154.5 434 31.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.6e-34 151.0 461 31.7
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 7.7e-31 139.4 81 88.9
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.0e-30 139.0 102 72.5
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.2e-29 134.0 430 29.5
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.0e-26 124.8 382 32.5
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 4.8e-25 120.2 483 29.2
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 7.0e-24 116.3 193 43.0
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 5.0e-22 110.2 174 45.4
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 1.8e-16 91.7 67 74.6
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 3.1e-16 90.9 62 79.0
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.1e-16 90.5 126 48.4
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.5e-13 82.0 147 44.9
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 6.8e-11 73.2 41 80.5


User provided reference genes

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