Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p54260 Brassica napus HOM05D007572 ORTHO05D009535 9.5e-83 310.1 151 100.0
BraA09t40838Z Brassica rapa HOM05D007572 ORTHO05D009535 3.8e-63 245.0 125 96.0
BolC8t51291H Brassica oleracea HOM05D007572 ORTHO05D009535 2.4e-62 242.3 125 95.2
C08p37130 Brassica napus HOM05D007572 ORTHO05D009535 9.3e-62 240.4 125 94.4
Thhalv10006305m.g Eutrema salsugineum HOM05D007572 ORTHO05D009535 3.9e-60 235.0 125 92.0
Sp5g01190 Schrenkiella parvula HOM05D007572 ORTHO05D009535 1.6e-58 229.6 125 91.2
BcaC07g40711 Brassica carinata HOM05D007572 ORTHO05D009535 6.2e-58 227.6 130 86.2
AT3G62190 Arabidopsis thaliana HOM05D007572 ORTHO05D009535 7.6e-56 220.7 125 87.2
Carub.0005s2892 Capsella rubella HOM05D007572 ORTHO05D009535 7.6e-56 220.7 118 89.8
AL5G44940 Arabidopsis lyrata HOM05D007572 ORTHO05D009535 6.4e-55 217.6 125 85.6
Aa31LG10G16130 Aethionema arabicum HOM05D007572 ORTHO05D009535 1.3e-44 183.3 167 59.9
PGR142G3328 Punica granatum HOM05D007572 ORTHO05D009535 5.7e-35 151.4 125 64.8
Gohir.A07G131300 Gossypium hirsutum HOM05D007572 ORTHO05D009535 6.3e-34 147.9 126 61.1
Gohir.D07G135600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.8e-33 146.4 126 60.3
CiPaw.08G083700 Carya illinoinensis HOM05D007572 ORTHO05D009535 4.1e-33 145.2 125 64.8
HanXRQChr13g0414461 Helianthus annuus HOM05D007572 ORTHO05D009535 6.9e-33 144.4 126 59.5
CARHR172530 Cardamine hirsuta HOM05D007572 ORTHO05D009535 2.6e-32 142.5 78 84.6
Duzib138G0176 Durio zibethinus HOM05D007572 ORTHO05D009535 2.6e-32 142.5 127 61.4
Manes.05G010100 Manihot esculenta HOM05D007572 ORTHO05D009535 1.0e-31 140.6 126 59.5
Potri.002G188300 Populus trichocarpa HOM05D007572 ORTHO05D009535 1.0e-31 140.6 126 60.3
Eucgr.K00578 Eucalyptus grandis HOM05D007572 ORTHO05D009535 1.7e-31 139.8 129 58.9
Sed0017651 Sechium edule HOM05D007572 ORTHO05D009535 3.8e-31 138.7 126 57.1
Glyma.03G223300 Glycine max HOM05D007572 ORTHO05D009535 6.5e-31 137.9 126 57.9
TWI23G0551 Tripterygium wilfordii HOM05D007572 ORTHO05D009535 6.5e-31 137.9 125 60.8
Lsat_1_v5_gn_8_167180 Lactuca sativa HOM05D007572 ORTHO05D009535 1.4e-30 136.7 126 56.3
Aqoxy2G02521 Aquilegia oxysepala HOM05D007572 ORTHO05D009535 1.9e-30 136.3 153 49.0
Medtr7g110410 Medicago truncatula HOM05D007572 ORTHO05D009535 1.9e-30 136.3 126 57.1
Psat3g018080 Pisum sativum HOM05D007572 ORTHO05D009535 1.9e-30 136.3 126 58.7
arahy.Tifrunner.gnm1.ann1.XSK3JW Arachis hypogaea HOM05D007572 ORTHO05D009535 2.5e-30 136.0 126 57.9
Lj1g0010997 Lotus japonicus HOM05D007572 ORTHO05D009535 3.2e-30 135.6 126 56.3
TPR.G2442 Trifolium pratense HOM05D007572 ORTHO05D009535 3.2e-30 135.6 126 59.5
arahy.Tifrunner.gnm1.ann1.W6UB1T Arachis hypogaea HOM05D007572 ORTHO05D009535 5.5e-30 134.8 126 57.9
CsaV3_5G029750 Cucumis sativus L. HOM05D007572 ORTHO05D009535 5.5e-30 134.8 125 56.8
Nn3g21914 Nelumbo nucifera HOM05D007572 ORTHO05D009535 7.2e-30 134.4 126 54.0
Dinv12090 Davidia involucrata HOM05D007572 ORTHO05D009535 1.6e-29 133.3 125 56.8
Phvul.001G217100 Phaseolus vulgaris HOM05D007572 ORTHO05D009535 2.1e-29 132.9 128 56.2
MELO3C034050.2 Cucumis melo HOM05D007572 ORTHO05D009535 2.7e-29 132.5 125 56.0
Lalb_Chr04g0260171 Lupinus albus HOM05D007572 ORTHO05D009535 3.6e-29 132.1 126 56.3
BcaB07g33721 Brassica carinata HOM05D007572 ORTHO05D009535 1.5e-27 126.7 81 76.5
CDE02G1692 Ceratophyllum demersum HOM05D007572 ORTHO05D009535 2.6e-27 125.9 141 46.8
Nitab4.5_0000363g0140 Nicotiana tabacum HOM05D007572 ORTHO05D009535 3.3e-27 125.6 122 59.0
Solyc06g009340.4 Solanum lycopersicum HOM05D007572 ORTHO05D009535 7.4e-27 124.4 129 56.6
Ah.11g045850 Amaranthus hybridus HOM05D007572 ORTHO05D009535 9.7e-27 124.0 117 53.8
Nitab4.5_0003324g0080 Nicotiana tabacum HOM05D007572 ORTHO05D009535 9.7e-27 124.0 137 52.6
Sopen06g004090 Solanum pennellii HOM05D007572 ORTHO05D009535 9.7e-27 124.0 135 54.1
CAN.G1280.44 Capsicum annuum HOM05D007572 ORTHO05D009535 1.7e-26 123.2 136 54.4
ATR0796G039 Amborella trichopoda HOM05D007572 ORTHO05D009535 4.8e-26 121.7 126 50.8
PSO210G6566 Papaver somniferum HOM05D007572 ORTHO05D009535 1.1e-25 120.6 128 49.2
Hund11629 Selenicereus undatus HOM05D007572 ORTHO05D009535 1.1e-25 120.6 126 50.0
PGSC0003DMG400007276 Solanum tuberosum HOM05D007572 ORTHO05D009535 5.3e-25 118.2 118 55.1
Cc01_g21830 Coffea canephora HOM05D007572 ORTHO05D009535 6.9e-25 117.9 126 50.0
Rhsim01G0293200 Rhododendron simsii HOM05D007572 ORTHO05D009535 1.7e-23 113.2 182 39.6
Oeu052583.1 Olea europaea HOM05D007572 ORTHO05D009535 4.2e-22 108.6 126 50.0
Zm00001eb110000 Zea mays HOM05D007572 ORTHO05D009535 1.4e-20 103.6 125 49.6
Peaxi162Scf00058g02018 Petunia axillaris HOM05D007572 ORTHO05D009535 5.2e-20 101.7 117 48.7
vmacro16962 Vaccinium macrocarpon HOM05D007572 ORTHO05D009535 1.1e-19 100.5 119 50.4
VMungo1383G1880 Vigna mungo HOM05D007572 ORTHO05D009535 4.4e-19 98.6 115 53.0
Pp3c17_19540 Physcomitrium patens HOM05D007572 ORTHO05D009535 4.8e-18 95.1 126 43.7
AagrBONN_evm.TU.Sc2ySwM_228.110 Anthoceros agrestis HOM05D007572 ORTHO05D009535 1.1e-17 94.0 120 42.5
Migut.D00021 Erythranthe guttata HOM05D007572 ORTHO05D009535 7.0e-17 91.3 150 40.0
SalBow6G4072 Salvia bowleyana HOM05D007572 ORTHO05D009535 1.3e-15 87.0 126 38.9
unitig_60.g25647 Utricularia gibba HOM05D007572 ORTHO05D009535 1.7e-15 86.7 121 43.8
Gorai.001G147500 Gossypium raimondii HOM05D007572 ORTHO05D009535 3.8e-15 85.5 67 62.7
QL12p034502 Quercus lobata HOM05D007572 ORTHO05D009535 1.2e-13 80.5 67 59.7
CBR_g88332 Chara braunii HOM05D007572 ORTHO05D009535 2.1e-13 79.7 143 32.2
Thecc.01G323600 Theobroma cacao HOM05D007572 ORTHO05D009535 2.7e-13 79.3 68 60.3
Atru.chr5.884 Acer truncatum HOM05D007572 ORTHO05D009535 4.0e-12 75.5 49 73.5
GSVIVG01028267001 Vitis vinifera HOM05D007572 ORTHO05D009535 4.0e-12 75.5 68 54.4
Duzib133G1540 Durio zibethinus HOM05D007572 ORTHO05D009535 5.2e-12 75.1 66 57.6
SGA_v2.0_scaffold80G25682 Striga asiatica HOM05D007572 ORTHO05D009535 1.5e-11 73.6 160 35.0
Haze_05130 Corylus avellana HOM05D007572 ORTHO05D009535 3.3e-11 72.4 51 72.5
Cfa004892 Carpinus fangiana HOM05D007572 ORTHO05D009535 9.7e-11 70.9 53 69.8
Gorai.001G147700 Gossypium raimondii HOM05D007572 ORTHO05D009535 1.3e-10 70.5 52 61.5
MBI18_g10389_MAGBIO Magnolia biondii HOM05D007572 ORTHO05D009535 2.2e-10 69.7 79 48.1
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 2.2e-10 69.7 53 64.2
Ciclev10024492m.g Citrus clementina HOM05D007572 ORTHO05D009535 6.3e-10 68.2 46 67.4
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 6.3e-10 68.2 50 62.0
Sc05g0000110 Simmondsia chinensis HOM05D007572 ORTHO05D009535 1.1e-09 67.4 50 66.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 5.3e-09 65.1 67 52.2
PSO761G0106 Papaver somniferum HOM05D007572 ORTHO05D009535 5.3e-09 65.1 56 57.1
AUR62011699 Chenopodium quinoa HOM05D007572 ORTHO05D009535 9.1e-09 64.3 52 55.8
Sabra02G0167000 Salix brachista HOM05D007572 ORTHO05D009535 1.2e-08 63.9 52 59.6
CANSAT01G2141 Cannabis sativa HOM05D007572 ORTHO05D009535 3.5e-08 62.4 57 57.9
SEGI_13004 Sequoiadendron giganteum HOM05D007572 ORTHO05D009535 1.7e-07 60.1 66 47.0
Atru.chr5.887 Acer truncatum HOM05D007572 ORTHO05D009535 2.9e-07 59.3 40 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2777 Anthoceros agrestis HOM05D007572 ORTHO05D009535 1.1e-06 57.4 43 58.1
DCAR_002931 Daucus carota HOM05D007572 ORTHO05D009535 5.5e-06 55.1 51 52.9
Os07g0637150 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 5.5e-06 55.1 57 49.1


User provided reference genes

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