Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p52810 Brassica napus HOM05D006574 ORTHO05D008210 5.4e-201 704.1 359 100.0
BraA09t40713Z Brassica rapa HOM05D006574 ORTHO05D008210 8.9e-196 686.8 359 98.1
C08p35540 Brassica napus HOM05D006574 ORTHO05D008210 2.1e-157 559.3 320 92.8
BolC8t51146H Brassica oleracea HOM05D006574 ORTHO05D008210 4.0e-156 555.1 320 92.5
Sp5g02640 Schrenkiella parvula HOM05D006574 ORTHO05D008210 1.0e-143 513.8 325 81.8
Thhalv10006432m.g Eutrema salsugineum HOM05D006574 ORTHO05D008210 7.4e-142 507.7 333 80.5
BcaC02g10162 Brassica carinata HOM05D006574 ORTHO05D008210 1.8e-140 503.1 317 83.9
C04p32070 Brassica napus HOM05D006574 ORTHO05D008210 1.8e-140 503.1 317 83.9
BolC4t24760H Brassica oleracea HOM05D006574 ORTHO05D008210 1.8e-140 503.1 317 83.9
BraA04t15877Z Brassica rapa HOM05D006574 ORTHO05D008210 2.0e-139 499.6 317 82.3
A04p01560 Brassica napus HOM05D006574 ORTHO05D008210 4.5e-139 498.4 318 82.4
BcaB02g08163 Brassica carinata HOM05D006574 ORTHO05D008210 2.2e-138 496.1 322 82.0
Carub.0005s2733 Capsella rubella HOM05D006574 ORTHO05D008210 3.0e-135 485.7 334 77.2
AT3G60590 Arabidopsis thaliana HOM05D006574 ORTHO05D008210 5.7e-134 481.5 332 77.4
CARHR171000 Cardamine hirsuta HOM05D006574 ORTHO05D008210 1.9e-129 466.5 327 76.1
Aa31LG10G14870 Aethionema arabicum HOM05D006574 ORTHO05D008210 1.2e-118 430.6 330 70.9
THA.LOC104817218 Tarenaya hassleriana HOM05D006574 ORTHO05D008210 1.2e-112 410.6 346 66.2
Cpa.g.sc129.21 Carica papaya HOM05D006574 ORTHO05D008210 3.3e-97 359.4 341 58.1
Sabra14G0044800 Salix brachista HOM05D006574 ORTHO05D008210 1.4e-95 354.0 290 62.4
CANSAT56G0701 Cannabis sativa HOM05D006574 ORTHO05D008210 6.8e-95 351.7 274 64.6
CANSAT56G2026 Cannabis sativa HOM05D006574 ORTHO05D008210 8.9e-95 351.3 274 64.6
Potri.014G061000 Populus trichocarpa HOM05D006574 ORTHO05D008210 1.1e-92 344.4 290 61.0
QL04p038697 Quercus lobata HOM05D006574 ORTHO05D008210 1.1e-92 344.4 316 58.2
Prupe.2G138000 Prunus persica HOM05D006574 ORTHO05D008210 2.4e-92 343.2 285 60.7
Ciclev10021078m.g Citrus clementina HOM05D006574 ORTHO05D008210 5.4e-92 342.0 301 57.5
Hma1.2p1_0386F.1_g141830 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 7.0e-92 341.7 291 58.8
CSS0016139 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 2.7e-91 339.7 289 58.8
CSS0019673 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 2.7e-91 339.7 289 58.8
Thecc.01G382800 Theobroma cacao HOM05D006574 ORTHO05D008210 2.7e-91 339.7 340 55.3
Cfa011166 Carpinus fangiana HOM05D006574 ORTHO05D008210 3.5e-91 339.3 289 59.5
Ca_19840_v3 Cicer arietinum L. HOM05D006574 ORTHO05D008210 1.3e-90 337.4 277 58.8
MD07G1115500 Malus domestica HOM05D006574 ORTHO05D008210 1.7e-90 337.0 287 59.6
Lj3g0024356 Lotus japonicus HOM05D006574 ORTHO05D008210 3.0e-90 336.3 284 58.1
Manes.05G049100 Manihot esculenta HOM05D006574 ORTHO05D008210 3.9e-90 335.9 277 61.0
TPR.G4993 Trifolium pratense HOM05D006574 ORTHO05D008210 3.9e-90 335.9 277 59.9
Glyma.01G135900 Glycine max HOM05D006574 ORTHO05D008210 6.6e-90 335.1 286 58.4
Sed0000081 Sechium edule HOM05D006574 ORTHO05D008210 6.6e-90 335.1 328 55.2
Glyma.03G032200 Glycine max HOM05D006574 ORTHO05D008210 8.6e-90 334.7 298 58.1
RcHm_v2.0_Chr1g0349101 Rosa chinensis HOM05D006574 ORTHO05D008210 1.1e-89 334.3 277 61.4
CiPaw.13G032400 Carya illinoinensis HOM05D006574 ORTHO05D008210 1.5e-89 334.0 278 61.2
FAN03G3328 Fragaria x ananassa HOM05D006574 ORTHO05D008210 1.5e-89 334.0 332 54.2
FAN01G0938 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.5e-89 333.2 330 54.2
Medtr4g027070 Medicago truncatula HOM05D006574 ORTHO05D008210 4.3e-89 332.4 277 58.1
Dinv43672 Davidia involucrata HOM05D006574 ORTHO05D008210 9.5e-89 331.3 327 53.8
Duzib138G0195 Durio zibethinus HOM05D006574 ORTHO05D008210 9.5e-89 331.3 364 51.1
FAN10G3734 Fragaria x ananassa HOM05D006574 ORTHO05D008210 1.6e-88 330.5 337 53.7
Psat7g236040 Pisum sativum HOM05D006574 ORTHO05D008210 2.1e-88 330.1 277 57.4
FAN10G1171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.8e-88 329.7 332 53.3
GSVIVG01027684001 Vitis vinifera HOM05D006574 ORTHO05D008210 2.8e-88 329.7 331 52.6
arahy.Tifrunner.gnm1.ann1.KNQ922 Arachis hypogaea HOM05D006574 ORTHO05D008210 8.0e-88 328.2 284 57.7
ClCG00G005790 Citrullus lanatus HOM05D006574 ORTHO05D008210 1.4e-87 327.4 319 55.8
VMungo0331G0612 Vigna mungo HOM05D006574 ORTHO05D008210 1.4e-87 327.4 285 57.9
Lalb_Chr07g0190251 Lupinus albus HOM05D006574 ORTHO05D008210 1.8e-87 327.0 275 57.8
Lalb_Chr12g0207901 Lupinus albus HOM05D006574 ORTHO05D008210 2.3e-87 326.6 330 52.7
MELO3C005473.2 Cucumis melo HOM05D006574 ORTHO05D008210 4.0e-87 325.9 327 53.8
Phvul.010G072300 Phaseolus vulgaris HOM05D006574 ORTHO05D008210 2.0e-86 323.6 285 57.2
AUR62004165 Chenopodium quinoa HOM05D006574 ORTHO05D008210 2.6e-86 323.2 280 58.9
Gohir.A11G078700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 4.4e-86 322.4 314 55.7
FAN06G3094 Fragaria x ananassa HOM05D006574 ORTHO05D008210 5.8e-86 322.0 341 51.9
TWI59G0788 Tripterygium wilfordii HOM05D006574 ORTHO05D008210 7.5e-86 321.6 277 60.3
AUR62013662 Chenopodium quinoa HOM05D006574 ORTHO05D008210 1.3e-85 320.9 280 58.2
Aqoxy5G03888 Aquilegia oxysepala HOM05D006574 ORTHO05D008210 1.7e-85 320.5 279 57.7
FAN06G2171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 1.7e-85 320.5 341 51.6
CsaV3_5G004680 Cucumis sativus L. HOM05D006574 ORTHO05D008210 2.2e-85 320.1 325 53.8
Gohir.D11G083300 Gossypium hirsutum HOM05D006574 ORTHO05D008210 2.2e-85 320.1 330 53.9
COL.COLO4_12488 Corchorus olitorius HOM05D006574 ORTHO05D008210 2.9e-85 319.7 308 55.5
FvH4_7g11080 Fragaria vesca HOM05D006574 ORTHO05D008210 2.9e-85 319.7 341 51.6
EL10Ac1g00838 Beta vulgaris HOM05D006574 ORTHO05D008210 3.7e-85 319.3 333 52.3
Gorai.007G088900 Gossypium raimondii HOM05D006574 ORTHO05D008210 1.1e-84 317.8 330 53.6
Ah.05g173830 Amaranthus hybridus HOM05D006574 ORTHO05D008210 2.4e-84 316.6 304 53.9
CAN.G1872.8 Capsicum annuum HOM05D006574 ORTHO05D008210 5.4e-84 315.5 304 53.9
vmacro13444 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 7.0e-84 315.1 279 55.2
vmacro22438 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 7.0e-84 315.1 279 55.2
TAR374G0842 Trochodendron aralioides HOM05D006574 ORTHO05D008210 1.2e-83 314.3 280 57.1
PGR004G2311 Punica granatum HOM05D006574 ORTHO05D008210 2.1e-83 313.5 296 55.4
Peaxi162Scf00803g00013 Petunia axillaris HOM05D006574 ORTHO05D008210 3.5e-83 312.8 286 55.9
Rhsim07G0031300 Rhododendron simsii HOM05D006574 ORTHO05D008210 7.8e-83 311.6 279 55.9
Nitab4.5_0000859g0210 Nicotiana tabacum HOM05D006574 ORTHO05D008210 2.3e-82 310.1 280 57.1
Sopen01g036640 Solanum pennellii HOM05D006574 ORTHO05D008210 5.1e-82 308.9 305 53.1
PGSC0003DMG400026016 Solanum tuberosum HOM05D006574 ORTHO05D008210 6.6e-82 308.5 305 53.4
Eucgr.D02492 Eucalyptus grandis HOM05D006574 ORTHO05D008210 8.6e-82 308.1 286 55.2
Solyc01g090900.3 Solanum lycopersicum HOM05D006574 ORTHO05D008210 8.6e-82 308.1 305 53.8
DCAR_015883 Daucus carota HOM05D006574 ORTHO05D008210 1.5e-81 307.4 290 54.5
Nitab4.5_0008963g0020 Nicotiana tabacum HOM05D006574 ORTHO05D008210 1.5e-81 307.4 305 53.8
HanXRQChr03g0093261 Helianthus annuus HOM05D006574 ORTHO05D008210 2.1e-80 303.5 272 54.0
Gorai.004G163900 Gossypium raimondii HOM05D006574 ORTHO05D008210 1.8e-79 300.4 343 50.1
Nn6g33974 Nelumbo nucifera HOM05D006574 ORTHO05D008210 1.8e-79 300.4 262 58.4
Oeu000020.1 Olea europaea HOM05D006574 ORTHO05D008210 1.8e-79 300.4 325 51.4
Lj7P535T34 Lonicera japonica HOM05D006574 ORTHO05D008210 3.1e-79 299.7 274 56.9
PSO063G4205 Papaver somniferum HOM05D006574 ORTHO05D008210 4.0e-79 299.3 282 54.3
ECA240G1589 Erigeron canadensis HOM05D006574 ORTHO05D008210 6.8e-79 298.5 272 53.3
PSO782G0696 Papaver somniferum HOM05D006574 ORTHO05D008210 8.9e-79 298.1 282 54.3
Cc02_g24430 Coffea canephora HOM05D006574 ORTHO05D008210 1.3e-77 294.3 295 53.2
MSTRG.4912 Avicennia marina HOM05D006574 ORTHO05D008210 1.1e-76 291.2 298 52.3
HanXRQChr13g0423061 Helianthus annuus HOM05D006574 ORTHO05D008210 1.7e-74 283.9 292 51.7
Gohir.D08G157700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 2.5e-73 280.0 313 50.2
Migut.L01604 Erythranthe guttata HOM05D006574 ORTHO05D008210 5.6e-73 278.9 248 56.9
Migut.N01615 Erythranthe guttata HOM05D006574 ORTHO05D008210 1.4e-71 274.2 239 56.5
Gohir.A08G136900 Gossypium hirsutum HOM05D006574 ORTHO05D008210 2.6e-70 270.0 220 61.8
Lsat_1_v5_gn_3_129181 Lactuca sativa HOM05D006574 ORTHO05D008210 1.3e-69 267.7 259 51.4
Actinidia22763 Actinidia chinensis HOM05D006574 ORTHO05D008210 1.7e-69 267.3 274 51.5
Sc02g0002790 Simmondsia chinensis HOM05D006574 ORTHO05D008210 1.9e-68 263.8 198 65.2
unitig_8.g3385 Utricularia gibba HOM05D006574 ORTHO05D008210 7.1e-68 261.9 274 50.4
Os04g0534500 Oryza sativa ssp. japonica HOM05D006574 ORTHO05D008210 9.2e-68 261.5 246 54.9
HanXRQChr13g0422971 Helianthus annuus HOM05D006574 ORTHO05D008210 6.6e-66 255.4 298 47.0
ATR0317G043 Amborella trichopoda HOM05D006574 ORTHO05D008210 1.1e-65 254.6 307 47.2
SGA_v2.0_scaffold43G16514 Striga asiatica HOM05D006574 ORTHO05D008210 2.1e-59 233.8 194 60.8
HPP92_027018 Vanilla planifolia HOM05D006574 ORTHO05D008210 4.6e-59 232.6 189 61.4
CDE12G0059 Ceratophyllum demersum HOM05D006574 ORTHO05D008210 3.9e-58 229.6 198 58.1
SEGI_22327 Sequoiadendron giganteum HOM05D006574 ORTHO05D008210 5.8e-54 215.7 248 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2636 Anthoceros agrestis HOM05D006574 ORTHO05D008210 9.0e-47 191.8 246 43.1
TAR374G1600 Trochodendron aralioides HOM05D006574 ORTHO05D008210 3.3e-41 173.3 162 55.6
Mapoly0010s0201 Marchantia polymorpha HOM05D006574 ORTHO05D008210 1.4e-39 167.9 210 44.8
Actinidia22819 Actinidia chinensis HOM05D006574 ORTHO05D008210 5.0e-37 159.5 150 51.3
HanXRQChr13g0422981 Helianthus annuus HOM05D006574 ORTHO05D008210 4.8e-32 142.9 190 46.8
HPP92_027026 Vanilla planifolia HOM05D006574 ORTHO05D008210 9.4e-20 102.1 69 68.1
Zm00001eb427440 Zea mays HOM05D006574 ORTHO05D008210 1.8e-15 87.8 130 40.0
vmacro22439 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 5.3e-15 86.3 60 66.7
Atru.chr5.248 Acer truncatum HOM05D006574 ORTHO05D008210 3.5e-14 83.6 49 75.5
AagrBONN_evm.TU.Sc2ySwM_344.2339 Anthoceros agrestis HOM05D025526 ORTHO05D023512 3.6e-11 73.6 207 29.0
PGSC0003DMG400005293 Solanum tuberosum HOM05D003072 ORTHO05D008464 1.4e-10 71.6 198 30.3
CAN.G22.19 Capsicum annuum HOM05D003072 ORTHO05D008464 3.0e-10 70.5 198 30.8
Hma1.2p1_0386F.1_g141840 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 6.7e-10 69.3 91 37.4
Cc04_g12330 Coffea canephora HOM05D003072 ORTHO05D008464 1.5e-09 68.2 192 30.7
Lsat_1_v5_gn_1_28241 Lactuca sativa HOM05D003072 ORTHO05D008464 2.6e-09 67.4 179 30.7
SalBow5G5496 Salvia bowleyana HOM05D003072 ORTHO05D008464 2.6e-09 67.4 172 32.0
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.3e-09 67.0 173 31.2
Potri.012G088700 Populus trichocarpa HOM05D003072 ORTHO05D008464 5.7e-09 66.2 197 29.9
SGA_v2.0_scaffold25G10826 Striga asiatica HOM05D003072 ORTHO05D008464 5.7e-09 66.2 216 30.1
AagrBONN_evm.TU.Sc2ySwM_228.2830 Anthoceros agrestis HOM05D025526 ORTHO05D023512 9.7e-09 65.5 206 27.7
ECA247G2325 Erigeron canadensis HOM05D003072 ORTHO05D008464 9.7e-09 65.5 172 31.4
Nitab4.5_0000025g0470 Nicotiana tabacum HOM05D003072 ORTHO05D008464 9.7e-09 65.5 178 29.8
Nitab4.5_0014195g0010 Nicotiana tabacum HOM05D003072 ORTHO05D008464 9.7e-09 65.5 178 29.8
Prupe.5G170600 Prunus persica HOM05D003072 ORTHO05D008464 9.7e-09 65.5 173 32.9
COL.COLO4_30098 Corchorus olitorius HOM05D003072 ORTHO05D008464 1.3e-08 65.1 190 28.9
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.3e-08 65.1 192 28.6
Thecc.03G018600 Theobroma cacao HOM05D003072 ORTHO05D008464 1.3e-08 65.1 170 30.6
Sabra12G0063900 Salix brachista HOM05D003072 ORTHO05D008464 2.8e-08 63.9 197 29.4
CANSAT80G0622 Cannabis sativa HOM05D003072 ORTHO05D008464 3.7e-08 63.5 173 30.6
TAR371G0662 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.8e-08 63.2 173 31.8
TAR374G0556 Trochodendron aralioides HOM05D006574 ORTHO05D008210 6.3e-08 62.8 91 36.3
Pp3c21_4590 Physcomitrium patens HOM05D003072 ORTHO05D008464 8.2e-08 62.4 193 29.0
Lalb_Chr23g0273311 Lupinus albus HOM05D003072 ORTHO05D008464 1.1e-07 62.0 250 28.0
Cfa019166 Carpinus fangiana HOM05D003072 ORTHO05D008464 1.4e-07 61.6 173 30.6
ClCG06G017110 Citrullus lanatus HOM05D003072 ORTHO05D008464 1.4e-07 61.6 175 30.9
TWI23G0250 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 1.4e-07 61.6 197 29.9
GSVIVG01007705001 Vitis vinifera HOM05D003072 ORTHO05D008464 1.4e-07 61.6 173 31.2
Sed0027860 Sechium edule HOM05D003072 ORTHO05D008464 1.8e-07 61.2 190 28.9
Aqoxy3G02847 Aquilegia oxysepala HOM05D003072 ORTHO05D008464 2.4e-07 60.8 173 29.5
Manes.06G107000 Manihot esculenta HOM05D003072 ORTHO05D008464 2.4e-07 60.8 192 28.6
HanXRQChr02g0035971 Helianthus annuus HOM05D003072 ORTHO05D008464 3.1e-07 60.5 169 30.2
MD06G1171000 Malus domestica HOM05D003072 ORTHO05D008464 3.1e-07 60.5 173 30.6
ATR1152G060 Amborella trichopoda HOM05D003072 ORTHO05D008464 5.3e-07 59.7 172 30.8
Mapoly0088s0089 Marchantia polymorpha HOM05D025526 ORTHO05D023512 5.3e-07 59.7 202 27.7
QL10p010881 Quercus lobata HOM05D003072 ORTHO05D008464 5.3e-07 59.7 173 29.5
Actinidia19109 Actinidia chinensis HOM05D003072 ORTHO05D008464 7.0e-07 59.3 173 30.1
Migut.O00122 Erythranthe guttata HOM05D003072 ORTHO05D008464 7.0e-07 59.3 175 29.7
MD14G1176700 Malus domestica HOM05D003072 ORTHO05D008464 7.0e-07 59.3 173 30.6
Duzib068G0599 Durio zibethinus HOM05D003072 ORTHO05D008464 9.1e-07 58.9 170 30.0
AagrBONN_evm.TU.Sc2ySwM_344.2078 Anthoceros agrestis HOM05D003072 ORTHO05D008464 1.2e-06 58.5 179 30.7
Ciclev10020708m.g Citrus clementina HOM05D003072 ORTHO05D008464 1.2e-06 58.5 173 30.6
vmacro16626 Vaccinium macrocarpon HOM05D003072 ORTHO05D008464 1.2e-06 58.5 172 29.7
Gohir.A09G172700 Gossypium hirsutum HOM05D003072 ORTHO05D008464 2.6e-06 57.4 170 29.4
Eucgr.K02823 Eucalyptus grandis HOM05D003072 ORTHO05D008464 4.5e-06 56.6 171 29.8
Ca_16157_v3 Cicer arietinum L. HOM05D003072 ORTHO05D008464 7.7e-06 55.8 219 26.0
FAN04G2540 Fragaria x ananassa HOM05D003072 ORTHO05D008464 7.7e-06 55.8 173 28.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 7.7e-06 55.8 173 28.9
FAN18G3341 Fragaria x ananassa HOM05D003072 ORTHO05D008464 7.7e-06 55.8 173 28.9


User provided reference genes

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