Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.4e-122 443.0 229 100.0
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 4.2e-122 441.4 229 99.6
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 4.6e-121 438.0 229 98.7
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 1.3e-120 436.4 229 98.3
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 4.3e-119 431.4 229 96.1
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.6e-118 429.5 229 95.6
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 1.8e-117 426.0 229 95.2
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 3.1e-117 425.2 229 95.6
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 5.3e-117 424.5 229 94.3
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.7e-115 419.5 229 94.8
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.7e-115 419.5 229 94.8
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.2e-108 396.7 229 89.5
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.0e-108 396.0 229 88.6
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 8.4e-107 390.6 229 86.9
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 6.0e-105 384.4 229 84.7
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.3e-103 378.6 229 83.8
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.0e-88 330.5 231 72.7
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 6.5e-83 311.2 232 69.8
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 4.2e-82 308.5 230 69.1
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 68.3
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.2e-81 307.0 230 68.3
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.6e-81 306.6 230 67.4
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 68.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 3.6e-81 305.4 229 67.7
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 66.5
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.3e-80 302.8 230 65.7
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 3.0e-80 302.4 230 67.8
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 3.9e-80 302.0 230 67.0
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.9e-80 302.0 230 66.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 66.1
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 8.8e-80 300.8 229 65.5
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 66.5
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 65.2
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 65.7
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 65.2
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.4e-79 298.5 229 65.5
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 66.5
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 68.3
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 65.2
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 9.7e-79 297.4 230 65.2
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 9.7e-79 297.4 229 65.9
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.8e-78 295.8 229 64.2
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 2.8e-78 295.8 229 65.1
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 4.8e-78 295.0 232 65.9
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 67.4
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 66.1
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 8.2e-78 294.3 230 65.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 8.2e-78 294.3 230 65.2
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 8.2e-78 294.3 230 66.1
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.4e-77 293.5 230 67.0
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.4e-77 293.5 230 63.9
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.8e-77 293.1 230 66.1
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 64.8
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 63.9
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 4.1e-77 292.0 229 65.5
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 66.1
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.5e-76 290.0 230 64.3
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 64.8
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 63.5
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 2.6e-76 289.3 230 65.7
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 2.6e-76 289.3 231 66.7
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.5e-76 288.9 230 64.8
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 63.5
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 63.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.7e-75 286.6 230 62.6
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 64.3
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 2.9e-75 285.8 230 62.6
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 5.0e-75 285.0 232 62.5
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 8.5e-75 284.3 232 62.1
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 64.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.4e-74 283.5 229 62.9
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 2.5e-74 282.7 232 64.2
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 3.2e-74 282.3 220 65.9
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 4.2e-74 282.0 230 62.6
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 4.2e-74 282.0 228 64.0
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 9.4e-74 280.8 230 62.2
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 9.4e-74 280.8 254 59.8
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 1.2e-73 280.4 230 62.6
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.2e-73 280.4 229 63.8
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 3.6e-73 278.9 229 62.9
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 3.6e-73 278.9 230 62.6
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 6.1e-73 278.1 238 61.3
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.4e-72 276.9 230 60.9
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.3e-72 276.2 230 61.3
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.9e-72 275.4 263 56.7
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 6.7e-72 274.6 230 60.0
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.1e-71 273.9 229 60.7
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.5e-71 273.5 230 60.9
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 2.0e-71 273.1 232 61.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 2.6e-71 272.7 230 61.7
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 2.6e-71 272.7 230 62.2
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 4.4e-71 271.9 229 61.1
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 5.7e-71 271.6 230 62.2
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.3e-70 270.4 230 59.6
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.7e-70 270.0 252 57.5
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 3.7e-70 268.9 249 58.2
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 4.8e-70 268.5 230 59.6
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 4.8e-70 268.5 220 63.2
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 2.6e-68 262.7 233 58.8
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.9e-66 256.5 236 57.6
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.5e-66 256.1 220 60.5
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.1e-65 253.1 138 93.5
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.7e-65 251.9 230 59.1
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 8.0e-65 251.1 175 76.0
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.7e-63 245.0 318 47.2
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.8e-62 242.7 199 61.8
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.7e-62 242.3 307 47.2
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 4.1e-61 238.8 216 58.8
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 2.7e-60 236.1 360 40.8
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.2e-58 228.8 230 53.9
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 4.8e-54 215.3 229 53.3
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.4e-53 213.0 180 63.9
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.4e-53 213.0 230 48.7
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.4e-53 211.8 180 60.6
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 5.9e-52 208.4 231 49.8
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 4.2e-50 202.2 166 60.2
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.6e-49 200.3 164 61.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 5.2e-48 195.3 164 60.4
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 8.9e-48 194.5 228 50.4
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.1e-45 187.6 234 46.6
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 7.0e-45 184.9 141 64.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 9.2e-45 184.5 164 58.5
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.0e-44 183.3 140 65.0
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 3.5e-44 182.6 282 39.7
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.7e-43 180.3 138 64.5
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 1.0e-40 171.0 117 70.9
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 3.1e-40 169.5 110 74.5
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.9e-40 167.9 149 57.7
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 7.5e-39 164.9 241 44.0
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.1e-37 159.1 243 42.0
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 6.2e-33 145.2 140 55.7
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 2.0e-31 140.2 266 38.3
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 3.4e-31 139.4 156 49.4
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 8.3e-30 134.8 216 39.4
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 4.1e-29 132.5 292 34.2
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 9.5e-26 121.3 137 48.9
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.7e-25 119.0 90 64.4
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.7e-22 110.5 83 63.9
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-21 107.8 123 51.2
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.6e-20 104.0 71 69.0
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 7.3e-18 95.1 102 52.9
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 5.2e-16 89.0 71 56.3
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 6.8e-16 88.6 80 62.5
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 8.9e-16 88.2 63 63.5
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 9.9e-15 84.7 69 56.5
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.2e-12 77.8 105 47.6
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.6e-12 77.4 87 52.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.5e-12 76.3 65 55.4
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.6e-12 75.9 54 66.7
CARHR037650 Cardamine hirsuta HOM05D004531 ORTHO05D005484 6.0e-12 75.5 53 71.7
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 7.8e-12 75.1 97 45.4
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.0e-11 74.7 137 36.5
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.3e-10 69.3 58 55.2
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 5.3e-08 62.4 91 38.5
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 4.4e-07 59.3 61 45.9
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 3.8e-06 56.2 41 63.4
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 4.9e-06 55.8 58 55.2


User provided reference genes

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