Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p52500 Brassica napus HOM05D003879 ORTHO05D003858 1.4e-64 249.6 134 100.0
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 2.0e-60 235.7 152 87.5
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-22 109.4 156 49.4
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 3.0e-19 99.0 149 48.3
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 3.0e-19 99.0 149 48.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 3.0e-19 99.0 162 45.1
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 3.9e-19 98.6 156 46.2
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 3.9e-19 98.6 156 46.2
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 1.9e-18 96.3 160 47.5
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 4.7e-17 91.7 156 43.6
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 8.1e-17 90.9 157 42.7
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 8.1e-17 90.9 157 42.7
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 6.8e-16 87.8 144 44.4
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-14 82.8 158 44.3
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-14 82.8 158 44.3
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 2.9e-14 82.4 147 45.6
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 4.9e-14 81.6 111 48.6
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.4e-13 79.3 161 38.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.2e-12 77.0 146 43.2
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 1.6e-12 76.6 157 41.4
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 3.5e-12 75.5 125 46.4
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 1.3e-11 73.6 165 40.0
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 3.9e-11 72.0 151 39.1
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.9e-11 72.0 148 40.5
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-10 70.5 147 42.2
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-10 70.1 157 38.9
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 3.3e-10 68.9 150 38.0
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 4.3e-10 68.6 56 60.7
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 5.6e-10 68.2 67 53.7
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 7.3e-10 67.8 63 54.0
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 7.3e-10 67.8 62 54.8
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 9.6e-10 67.4 58 60.3
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.6e-09 66.6 162 39.5
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 2.8e-09 65.9 71 50.7
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 2.8e-09 65.9 123 37.4
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 4.7e-09 65.1 75 52.0
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 6.2e-09 64.7 72 52.8
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.1e-08 63.9 55 58.2
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.4e-08 63.5 68 50.0
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.8e-08 63.2 60 51.7
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 2.4e-08 62.8 132 38.6
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 2.4e-08 62.8 75 50.7
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 2.4e-08 62.8 57 52.6
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 3.1e-08 62.4 56 51.8
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 3.1e-08 62.4 64 50.0
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 3.1e-08 62.4 62 54.8
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 3.1e-08 62.4 58 53.4
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 3.1e-08 62.4 68 47.1
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 3.1e-08 62.4 68 47.1
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 5.2e-08 61.6 72 45.8
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 5.2e-08 61.6 53 58.5
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 5.2e-08 61.6 68 48.5
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.2e-08 61.6 81 48.1
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 5.2e-08 61.6 57 50.9
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 6.8e-08 61.2 72 45.8
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 6.8e-08 61.2 75 49.3
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 8.9e-08 60.8 47 59.6
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 1.2e-07 60.5 73 45.2
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.2e-07 60.5 65 49.2
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.2e-07 60.5 68 45.6
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 1.5e-07 60.1 69 47.8
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.5e-07 60.1 132 36.4
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.0e-07 59.7 145 37.9
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 2.0e-07 59.7 56 51.8
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 2.0e-07 59.7 57 52.6
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.6e-07 59.3 72 45.8
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 2.6e-07 59.3 85 41.2
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 2.6e-07 59.3 68 50.0
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 2.6e-07 59.3 72 50.0
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 2.6e-07 59.3 74 44.6
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 2.6e-07 59.3 56 53.6
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 3.4e-07 58.9 63 54.0
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.4e-07 58.9 80 45.0
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 3.4e-07 58.9 81 54.3
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 4.4e-07 58.5 66 48.5
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 4.4e-07 58.5 61 47.5
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 4.4e-07 58.5 72 45.8
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 4.4e-07 58.5 139 36.7
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.8e-07 58.2 140 35.0
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 5.8e-07 58.2 74 48.6
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 5.8e-07 58.2 56 48.2
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 7.6e-07 57.8 56 53.6
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 7.6e-07 57.8 72 47.2
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 7.6e-07 57.8 68 45.6
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 7.6e-07 57.8 71 49.3
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 7.6e-07 57.8 78 43.6
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 9.9e-07 57.4 75 45.3
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 9.9e-07 57.4 52 53.8
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.3e-06 57.0 72 44.4
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.3e-06 57.0 53 50.9
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 1.3e-06 57.0 53 50.9
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 1.7e-06 56.6 53 52.8
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 2.2e-06 56.2 149 36.2
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 2.2e-06 56.2 52 53.8
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.2e-06 56.2 76 47.4
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.9e-06 55.8 54 48.1
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 2.9e-06 55.8 97 40.2
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 2.9e-06 55.8 73 46.6
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 2.9e-06 55.8 67 41.8
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 3.8e-06 55.5 77 41.6
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 4.9e-06 55.1 49 55.1
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.9e-06 55.1 72 43.1
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 4.9e-06 55.1 133 32.3
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 6.4e-06 54.7 72 45.8
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 6.4e-06 54.7 87 40.2
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 6.4e-06 54.7 64 46.9
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 6.4e-06 54.7 69 46.4
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 6.4e-06 54.7 138 33.3
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 8.4e-06 54.3 61 52.5
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 8.4e-06 54.3 133 31.6
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 8.4e-06 54.3 58 50.0


User provided reference genes

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