Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 2.5e-49 198.4 93 100.0
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 2.5e-49 198.4 93 100.0
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 1.8e-47 192.2 93 96.8
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 2.6e-46 188.3 93 94.6
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 2.6e-46 188.3 93 94.6
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 5.7e-46 187.2 93 93.5
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.3e-45 186.0 98 90.8
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 4.9e-45 184.1 98 90.8
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 4.9e-45 184.1 98 90.8
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 4.9e-45 184.1 98 89.8
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 4.9e-45 184.1 98 90.8
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 6.3e-45 183.7 94 93.6
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 6.3e-45 183.7 94 93.6
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 7.0e-44 180.3 98 89.8
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 7.8e-43 176.8 93 89.2
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 1.1e-41 172.9 98 84.7
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 1.4e-39 166.0 88 88.6
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 4.0e-39 164.5 100 80.0
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 6.0e-35 150.6 93 74.2
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 6.0e-35 150.6 93 74.2
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 6.0e-35 150.6 93 74.2
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.3e-34 148.7 93 73.1
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.0e-34 147.5 93 72.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 1.1e-33 146.4 93 69.9
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 2.5e-33 145.2 93 69.9
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 7.3e-33 143.7 93 69.9
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 4.7e-32 141.0 98 71.4
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 8.1e-32 140.2 93 67.7
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 8.1e-32 140.2 93 67.7
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.8e-31 139.0 97 69.1
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 2.3e-31 138.7 100 67.0
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 4.0e-31 137.9 97 68.0
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 6.8e-31 137.1 101 67.3
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 1.5e-30 136.0 96 67.7
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.5e-30 136.0 99 68.7
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 2.6e-30 135.2 94 69.1
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 3.4e-30 134.8 96 67.7
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.8e-30 134.0 93 65.6
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 7.5e-30 133.7 105 65.7
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 2.9e-29 131.7 101 66.3
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 3.7e-29 131.3 100 66.0
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 4.9e-29 131.0 106 60.4
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 8.3e-29 130.2 100 65.0
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 8.3e-29 130.2 99 67.7
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 1.4e-28 129.4 99 66.7
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 1.9e-28 129.0 103 64.1
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.9e-28 129.0 95 66.3
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 2.4e-28 128.6 103 63.1
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 2.4e-28 128.6 103 64.1
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.2e-28 128.3 96 67.7
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 3.2e-28 128.3 97 63.9
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 5.4e-28 127.5 106 62.3
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 5.4e-28 127.5 95 65.3
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 5.4e-28 127.5 103 64.1
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 9.2e-28 126.7 103 63.1
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 9.2e-28 126.7 103 63.1
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 1.2e-27 126.3 94 70.2
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-27 125.9 103 62.1
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 1.6e-27 125.9 101 63.4
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.6e-27 125.9 103 61.2
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.6e-27 125.9 99 62.6
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 1.6e-27 125.9 94 63.8
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 2.7e-27 125.2 102 59.8
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 3.5e-27 124.8 105 61.0
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 3.5e-27 124.8 105 61.0
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 4.6e-27 124.4 103 62.1
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 4.6e-27 124.4 103 62.1
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 6.0e-27 124.0 99 63.6
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 6.0e-27 124.0 111 57.7
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 7.8e-27 123.6 93 66.7
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 7.8e-27 123.6 103 63.1
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 7.8e-27 123.6 101 66.3
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 1.3e-26 122.9 107 58.9
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.3e-26 122.9 95 61.1
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.7e-26 122.5 102 64.7
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 107 60.7
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 107 60.7
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 107 60.7
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 3.0e-26 121.7 107 60.7
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 3.0e-26 121.7 100 62.0
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 3.0e-26 121.7 96 60.4
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 3.0e-26 121.7 99 60.6
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 5.1e-26 120.9 103 58.3
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 6.6e-26 120.6 102 59.8
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 8.6e-26 120.2 106 60.4
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 1.9e-25 119.0 105 61.0
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.9e-25 119.0 104 60.6
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 4.3e-25 117.9 99 60.6
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 5.6e-25 117.5 102 62.7
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 7.3e-25 117.1 88 65.9
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 7.3e-25 117.1 100 57.0
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.2e-24 116.3 108 61.1
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 1.2e-24 116.3 103 56.3
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.2e-24 116.3 104 56.7
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.6e-24 115.9 93 59.1
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.6e-24 115.9 102 60.8
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 1.6e-24 115.9 96 58.3
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 3.6e-24 114.8 102 61.8
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 4.7e-24 114.4 100 56.0
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 8.1e-24 113.6 118 51.7
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.4e-23 112.8 101 57.4
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 2.3e-23 112.1 98 56.1
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 3.1e-23 111.7 98 56.1
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.0e-23 111.3 91 61.5
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 4.0e-23 111.3 98 59.2
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.2e-22 109.8 105 57.1
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 2.6e-22 108.6 90 62.2
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 4.4e-22 107.8 95 57.9
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 4.4e-22 107.8 100 56.0
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 7.6e-22 107.1 65 78.5
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 9.9e-22 106.7 67 74.6
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 2.2e-21 105.5 97 57.7
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.9e-20 102.4 102 53.9
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 1.9e-20 102.4 62 74.2
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 5.4e-20 100.9 108 50.9
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 2.7e-19 98.6 95 56.8
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 1.7e-18 95.9 84 52.4
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 4.3e-17 91.3 67 58.2
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.8e-16 88.6 84 51.2
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.4e-15 86.3 63 57.1
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.1e-15 85.1 90 47.8
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 1.2e-14 83.2 52 69.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.2e-14 83.2 85 47.1
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 3.2e-12 75.1 55 65.5
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.6e-11 72.8 50 70.0
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 2.3e-10 68.9 32 87.5
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.5e-09 65.5 70 50.0
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 3.3e-09 65.1 70 48.6
TPR.G6988 Trifolium pratense HOM05D006197 ORTHO05D007718 6.9e-07 57.4 62 54.8


User provided reference genes

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