Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p51300 Brassica napus HOM05D003004 ORTHO05D041523 4.7e-44 180.6 82 100.0
BolC8t51006H Brassica oleracea HOM05D003004 ORTHO05D041523 2.6e-34 148.3 82 85.4
BraA09t40571Z Brassica rapa HOM05D003004 ORTHO05D003860 8.7e-22 106.7 57 84.2
BcaB02g07501 Brassica carinata HOM05D003004 ORTHO05D003860 3.4e-18 94.7 60 71.7
BcaC07g40223 Brassica carinata HOM05D003004 ORTHO05D003860 3.4e-18 94.7 51 82.4
BcaC07g40293 Brassica carinata HOM05D003004 ORTHO05D003860 3.4e-18 94.7 51 82.4
C08p34070 Brassica napus HOM05D003004 ORTHO05D003860 3.4e-18 94.7 51 82.4
BolC8t51005H Brassica oleracea HOM05D003004 ORTHO05D003860 3.4e-18 94.7 51 82.4
AT3G58740 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 4.5e-18 94.4 54 74.1
BcaC07g40224 Brassica carinata HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
A07p24330 Brassica napus HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
C06p25730 Brassica napus HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
BolC6t37735H Brassica oleracea HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
BraA07t30079Z Brassica rapa HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
Carub.0005s2554 Capsella rubella HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
CARHR169140 Cardamine hirsuta HOM05D003004 ORTHO05D003860 5.8e-18 94.0 59 72.9
Thhalv10005906m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 7.6e-18 93.6 59 71.2
Sp5g04090 Schrenkiella parvula HOM05D003004 ORTHO05D003860 7.6e-18 93.6 59 71.2
A09p51310 Brassica napus HOM05D003004 ORTHO05D003860 1.3e-17 92.8 59 71.2
C08p34090 Brassica napus HOM05D003004 ORTHO05D003860 1.3e-17 92.8 59 71.2
BolC8t51008H Brassica oleracea HOM05D003004 ORTHO05D003860 1.3e-17 92.8 59 71.2
BraA09t40572Z Brassica rapa HOM05D003004 ORTHO05D003860 1.3e-17 92.8 59 71.2
THA.LOC104802267 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 1.3e-17 92.8 59 71.2
ATR0213G001 Amborella trichopoda HOM05D003004 ORTHO05D003860 1.7e-17 92.4 57 75.4
THA.LOC104803095 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 1.7e-17 92.4 59 71.2
AL5G40520 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 2.2e-17 92.0 59 69.5
AT3G58750 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 2.2e-17 92.0 59 69.5
A04p02380 Brassica napus HOM05D003004 ORTHO05D003860 2.9e-17 91.7 52 75.0
BraA04t15967Z Brassica rapa HOM05D003004 ORTHO05D003860 2.9e-17 91.7 52 75.0
CARHR137870 Cardamine hirsuta HOM05D003004 ORTHO05D003860 2.9e-17 91.7 59 69.5
A09p51290 Brassica napus HOM05D003004 ORTHO05D003860 4.9e-17 90.9 50 80.0
Gohir.A11G059700 Gossypium hirsutum HOM05D003004 ORTHO05D003860 4.9e-17 90.9 57 73.7
Gohir.D11G063800 Gossypium hirsutum HOM05D003004 ORTHO05D003860 4.9e-17 90.9 57 73.7
Gorai.007G069000 Gossypium raimondii HOM05D003004 ORTHO05D003860 4.9e-17 90.9 57 73.7
Thecc.01G158700 Theobroma cacao HOM05D003004 ORTHO05D003860 4.9e-17 90.9 57 73.7
AL5G40510 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 6.5e-17 90.5 54 74.1
Medtr3g048920 Medicago truncatula HOM05D003004 ORTHO05D003860 6.5e-17 90.5 59 71.2
Hund00825 Selenicereus undatus HOM05D003004 ORTHO05D003860 6.5e-17 90.5 59 71.2
A05p03250 Brassica napus HOM05D003004 ORTHO05D003860 8.4e-17 90.1 57 71.9
A05p03320 Brassica napus HOM05D003004 ORTHO05D003860 8.4e-17 90.1 57 71.9
BraA05t19314Z Brassica rapa HOM05D003004 ORTHO05D003860 8.4e-17 90.1 57 71.9
BraA09t41560Z Brassica rapa HOM05D003004 ORTHO05D003860 8.4e-17 90.1 57 71.9
Ca_14627_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 8.4e-17 90.1 58 72.4
Ca_30924_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 8.4e-17 90.1 58 72.4
AL4G41400 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 1.1e-16 89.7 59 67.8
AT2G42790 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 1.1e-16 89.7 59 67.8
Carub.0004s2523 Capsella rubella HOM05D003004 ORTHO05D003860 1.1e-16 89.7 59 67.8
Ciclev10014944m.g Citrus clementina HOM05D003004 ORTHO05D003860 1.1e-16 89.7 59 71.2
COL.COLO4_33706 Corchorus olitorius HOM05D003004 ORTHO05D003860 1.1e-16 89.7 57 71.9
Eucgr.A01955 Eucalyptus grandis HOM05D003004 ORTHO05D003860 1.1e-16 89.7 59 71.2
PGR042G3476 Punica granatum HOM05D003004 ORTHO05D003860 1.1e-16 89.7 59 71.2
Atru.chr6.3557 Acer truncatum HOM05D003004 ORTHO05D003860 1.4e-16 89.4 59 67.8
Cpa.g.sc50.64 Carica papaya HOM05D003004 ORTHO05D003860 1.4e-16 89.4 57 71.9
Psat0s4248g0040 Pisum sativum HOM05D003004 ORTHO05D003860 1.4e-16 89.4 59 69.5
Aa31LG1G24550 Aethionema arabicum HOM05D003004 ORTHO05D003860 1.9e-16 89.0 57 70.2
arahy.Tifrunner.gnm1.ann1.7JY60E Arachis hypogaea HOM05D003004 ORTHO05D003860 1.9e-16 89.0 58 70.7
arahy.Tifrunner.gnm1.ann1.7SJ9JV Arachis hypogaea HOM05D003004 ORTHO05D003860 1.9e-16 89.0 58 70.7
C04p03890 Brassica napus HOM05D003004 ORTHO05D003860 1.9e-16 89.0 57 70.2
BolC4t22025H Brassica oleracea HOM05D003004 ORTHO05D003860 1.9e-16 89.0 57 70.2
Thhalv10016536m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 1.9e-16 89.0 59 67.8
Sc12g0003790 Simmondsia chinensis HOM05D003004 ORTHO05D003860 2.5e-16 88.6 57 71.9
CDE10G1091 Ceratophyllum demersum HOM05D003004 ORTHO05D003860 3.2e-16 88.2 57 71.9
MBI06_g08524_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 3.2e-16 88.2 57 71.9
Potri.016G089300 Populus trichocarpa HOM05D003004 ORTHO05D003860 3.2e-16 88.2 59 71.2
EL10Ac9g21023 Beta vulgaris HOM05D003004 ORTHO05D003860 4.2e-16 87.8 59 69.5
CARHR169120 Cardamine hirsuta HOM05D003004 ORTHO05D003860 4.2e-16 87.8 54 75.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.2e-16 87.8 59 69.5
AUR62024005 Chenopodium quinoa HOM05D003004 ORTHO05D003860 4.2e-16 87.8 57 71.9
Manes.01G129000 Manihot esculenta HOM05D003004 ORTHO05D003860 4.2e-16 87.8 57 71.9
Sp4g24910 Schrenkiella parvula HOM05D003004 ORTHO05D003860 4.2e-16 87.8 59 66.1
C04p33750 Brassica napus HOM05D003004 ORTHO05D003860 5.5e-16 87.4 51 72.5
BolC4t24943H Brassica oleracea HOM05D003004 ORTHO05D003860 5.5e-16 87.4 51 72.5
CiPaw.03G195600 Carya illinoinensis HOM05D003004 ORTHO05D003860 5.5e-16 87.4 57 71.9
ClCG02G018250 Citrullus lanatus HOM05D003004 ORTHO05D003860 5.5e-16 87.4 59 69.5
MELO3C019711.2 Cucumis melo HOM05D003004 ORTHO05D003860 5.5e-16 87.4 59 69.5
CsaV3_6G015630 Cucumis sativus L. HOM05D003004 ORTHO05D003860 5.5e-16 87.4 59 69.5
Thhalv10006483m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 5.5e-16 87.4 55 70.9
Sabra16G0095300 Salix brachista HOM05D003004 ORTHO05D003860 5.5e-16 87.4 59 69.5
Sed0013377 Sechium edule HOM05D003004 ORTHO05D003860 5.5e-16 87.4 59 69.5
Cc05_g09160 Coffea canephora HOM05D003004 ORTHO05D003860 7.1e-16 87.0 59 69.5
Lj6g0001020 Lotus japonicus HOM05D003004 ORTHO05D003860 7.1e-16 87.0 59 67.8
Potri.014G141900 Populus trichocarpa HOM05D003004 ORTHO05D003860 7.1e-16 87.0 57 71.9
AUR62036394 Chenopodium quinoa HOM05D003004 ORTHO05D003860 9.3e-16 86.7 57 70.2
Duzib147G1628 Durio zibethinus HOM05D003004 ORTHO05D003860 9.3e-16 86.7 57 70.2
PSO170G1739 Papaver somniferum HOM05D003004 ORTHO05D003860 9.3e-16 86.7 59 67.8
PSO528G0280 Papaver somniferum HOM05D003004 ORTHO05D003860 9.3e-16 86.7 59 67.8
SalBow7G3009 Salvia bowleyana HOM05D003004 ORTHO05D003860 9.3e-16 86.7 59 67.8
Dinv26515 Davidia involucrata HOM05D003004 ORTHO05D003860 1.2e-15 86.3 59 67.8
MBI07_g00476_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 1.2e-15 86.3 59 67.8
SalBow7G3774 Salvia bowleyana HOM05D003004 ORTHO05D003860 1.2e-15 86.3 59 67.8
HPP92_006375 Vanilla planifolia HOM05D003004 ORTHO05D003860 1.2e-15 86.3 57 68.4
Lalb_Chr10g0106821 Lupinus albus HOM05D003004 ORTHO05D003860 1.6e-15 85.9 59 64.4
Nitab4.5_0005521g0030 Nicotiana tabacum HOM05D003004 ORTHO05D003860 1.6e-15 85.9 58 69.0
Nitab4.5_0010286g0010 Nicotiana tabacum HOM05D003004 ORTHO05D003860 1.6e-15 85.9 58 69.0
TAR627G0638 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.6e-15 85.9 59 67.8
LjContig00310g0022930 Lotus japonicus HOM05D003004 ORTHO05D003860 2.1e-15 85.5 59 64.4
Manes.02G086900 Manihot esculenta HOM05D003004 ORTHO05D003860 2.1e-15 85.5 57 70.2
Os02g0232400 Oryza sativa ssp. japonica HOM05D003004 ORTHO05D003860 2.7e-15 85.1 57 68.4
VMungo0540G1035 Vigna mungo HOM05D003004 ORTHO05D003860 2.7e-15 85.1 59 66.1
GSVIVG01000817001 Vitis vinifera HOM05D003004 ORTHO05D003860 2.7e-15 85.1 57 70.2
Aqoxy4G00197 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 3.5e-15 84.7 59 66.1
Migut.M00216 Erythranthe guttata HOM05D003004 ORTHO05D003860 3.5e-15 84.7 57 68.4
TWI14G0060 Tripterygium wilfordii HOM05D003004 ORTHO05D003860 3.5e-15 84.7 57 70.2
CiPaw.04G135400 Carya illinoinensis HOM05D003004 ORTHO05D003860 4.6e-15 84.3 60 66.7
FAN05G0272 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.6e-15 84.3 59 66.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.6e-15 84.3 59 66.1
Peaxi162Scf00154g00814 Petunia axillaris HOM05D003004 ORTHO05D003860 4.6e-15 84.3 58 65.5
Sopen12g006360 Solanum pennellii HOM05D003004 ORTHO05D003860 4.6e-15 84.3 58 65.5
PGSC0003DMG400007797 Solanum tuberosum HOM05D003004 ORTHO05D003860 4.6e-15 84.3 58 65.5
TPR.G12698 Trifolium pratense HOM05D003004 ORTHO05D003860 4.6e-15 84.3 58 65.5
vmacro12432 Vaccinium macrocarpon HOM05D003004 ORTHO05D003860 4.6e-15 84.3 59 66.1
Actinidia11186 Actinidia chinensis HOM05D003004 ORTHO05D003860 6.0e-15 84.0 59 66.1
arahy.Tifrunner.gnm1.ann1.H9U4YS Arachis hypogaea HOM05D003004 ORTHO05D003860 6.0e-15 84.0 59 64.4
CAN.G486.13 Capsicum annuum HOM05D003004 ORTHO05D003860 6.0e-15 84.0 58 65.5
Dinv12715 Davidia involucrata HOM05D003004 ORTHO05D003860 6.0e-15 84.0 59 64.4
Glyma.08G311200 Glycine max HOM05D003004 ORTHO05D003860 6.0e-15 84.0 58 67.2
Glyma.18G104400 Glycine max HOM05D003004 ORTHO05D003860 6.0e-15 84.0 58 67.2
QL08p043421 Quercus lobata HOM05D003004 ORTHO05D003860 6.0e-15 84.0 59 66.1
arahy.Tifrunner.gnm1.ann1.6YST69 Arachis hypogaea HOM05D003004 ORTHO05D003860 7.9e-15 83.6 59 64.4
CSS0034735 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 7.9e-15 83.6 59 66.1
Nn3g21011 Nelumbo nucifera HOM05D003004 ORTHO05D003860 7.9e-15 83.6 57 68.4
RcHm_v2.0_Chr2g0150811 Rosa chinensis HOM05D003004 ORTHO05D003860 7.9e-15 83.6 59 66.1
Solyc12g011000.2 Solanum lycopersicum HOM05D003004 ORTHO05D003860 7.9e-15 83.6 58 65.5
TPR.G13562 Trifolium pratense HOM05D003004 ORTHO05D003860 7.9e-15 83.6 46 78.3
FvH4_6g37750 Fragaria vesca HOM05D003004 ORTHO05D003860 1.0e-14 83.2 59 64.4
Lj1A586T32 Lonicera japonica HOM05D003004 ORTHO05D003860 1.0e-14 83.2 59 62.7
Medtr5g091930 Medicago truncatula HOM05D003004 ORTHO05D003860 1.0e-14 83.2 58 65.5
Sopen07g029210 Solanum pennellii HOM05D003004 ORTHO05D003860 1.0e-14 83.2 58 65.5
PGSC0003DMG400017338 Solanum tuberosum HOM05D003004 ORTHO05D003860 1.0e-14 83.2 58 65.5
Glyma.14G026400 Glycine max HOM05D003004 ORTHO05D003860 1.3e-14 82.8 58 65.5
Oeu026478.3 Olea europaea HOM05D003004 ORTHO05D003860 1.3e-14 82.8 59 62.7
Phvul.006G035500 Phaseolus vulgaris HOM05D003004 ORTHO05D003860 1.3e-14 82.8 59 66.1
Aqoxy1G01921 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 64.4
MSTRG.6769 Avicennia marina HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 64.4
CAN.G1481.12 Capsicum annuum HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 62.7
Hma1.2p1_0178F.1_g078210 Hydrangea macrophylla HOM05D003004 ORTHO05D003860 1.8e-14 82.4 57 66.7
MD09G1156400 Malus domestica HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 66.1
MD17G1142900 Malus domestica HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 66.1
Prupe.3G169400 Prunus persica HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 66.1
Sabra14G0107100 Salix brachista HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 64.4
SalBow7G4649 Salvia bowleyana HOM05D003004 ORTHO05D003860 1.8e-14 82.4 59 66.1
CSS0027416 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 2.3e-14 82.0 59 64.4
ECA233G2966 Erigeron canadensis HOM05D003004 ORTHO05D003860 2.3e-14 82.0 57 66.7
HanXRQChr12g0367491 Helianthus annuus HOM05D003004 ORTHO05D003860 2.3e-14 82.0 57 66.7
HanXRQChr13g0386841 Helianthus annuus HOM05D003004 ORTHO05D003860 2.3e-14 82.0 57 66.7
Lsat_1_v5_gn_8_31881 Lactuca sativa HOM05D003004 ORTHO05D003860 2.3e-14 82.0 57 66.7
Lalb_Chr04g0248661 Lupinus albus HOM05D003004 ORTHO05D003860 2.3e-14 82.0 59 64.4
Solyc07g055840.3 Solanum lycopersicum HOM05D003004 ORTHO05D003860 2.3e-14 82.0 58 65.5
SGA_v2.0_scaffold538G52785 Striga asiatica HOM05D003004 ORTHO05D003860 2.3e-14 82.0 59 66.1
TAR629G1040 Trochodendron aralioides HOM05D003004 ORTHO05D003860 3.0e-14 81.6 57 64.9
MSTRG.14300 Avicennia marina HOM05D003004 ORTHO05D003860 5.1e-14 80.9 59 62.7
Zm00001eb239300 Zea mays HOM05D003004 ORTHO05D003860 5.1e-14 80.9 59 61.0
Peaxi162Scf00807g00038 Petunia axillaris HOM05D003004 ORTHO05D003860 6.7e-14 80.5 58 63.8
unitig_746.g26658 Utricularia gibba HOM05D003004 ORTHO05D003860 6.7e-14 80.5 57 64.9
Glyma.02G288500 Glycine max HOM05D003004 ORTHO05D003860 8.7e-14 80.1 58 63.8
VMungo0647G1404 Vigna mungo HOM05D003004 ORTHO05D003860 1.1e-13 79.7 58 63.8
Oeu006149.1 Olea europaea HOM05D003004 ORTHO05D003860 1.5e-13 79.3 59 61.0
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis HOM05D003004 ORTHO05D003860 3.3e-13 78.2 59 62.7
DCAR_009790 Daucus carota HOM05D003004 ORTHO05D003860 5.7e-13 77.4 59 61.0
Pp3c23_9030 Physcomitrium patens HOM05D003004 ORTHO05D003860 5.7e-13 77.4 59 61.0
C08p34080 Brassica napus HOM05D003004 ORTHO05D003860 1.3e-12 76.3 42 78.6
Mapoly0091s0007 Marchantia polymorpha HOM05D003004 ORTHO05D003860 2.8e-12 75.1 58 60.3
SMO367G0491 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 6.2e-12 73.9 59 59.3
Pp3c12_7740 Physcomitrium patens HOM05D003004 ORTHO05D003860 1.1e-11 73.2 57 63.2
Cre03.g149100 Chlamydomonas reinhardtii HOM05D003004 ORTHO05D003860 2.4e-11 72.0 58 58.6
PRCOL_00002388 Prasinoderma coloniale HOM05D003004 ORTHO05D003860 6.9e-11 70.5 57 57.9
Rhsim06G0122300 Rhododendron simsii HOM05D003004 ORTHO05D003860 6.9e-11 70.5 87 46.0
Mapoly0111s0039 Marchantia polymorpha HOM05D003004 ORTHO05D003860 2.6e-10 68.6 58 58.6
MCO05G529 Micromonas commoda HOM05D003004 ORTHO05D003860 3.4e-10 68.2 57 59.6
CBR_g4482 Chara braunii HOM05D003004 ORTHO05D003860 4.5e-10 67.8 57 56.1
DCAR_012665 Daucus carota HOM05D003004 ORTHO05D003860 2.2e-09 65.5 50 58.0
TPR.G20717 Trifolium pratense HOM05D003004 ORTHO05D003860 2.2e-09 65.5 42 73.8
CARHR169130 Cardamine hirsuta HOM05D003004 ORTHO05D003860 4.2e-08 61.2 36 75.0
Gohir.A07G037766 Gossypium hirsutum HOM05D003004 ORTHO05D003860 7.1e-08 60.5 41 68.3
Gohir.A10G071666 Gossypium hirsutum HOM05D003004 ORTHO05D003860 7.1e-08 60.5 41 68.3
Gohir.A13G067766 Gossypium hirsutum HOM05D003004 ORTHO05D003860 7.1e-08 60.5 41 68.3
Gorai.001G142600 Gossypium raimondii HOM05D003004 ORTHO05D003860 7.1e-08 60.5 41 68.3
SMO115G0146 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 6.1e-07 57.4 42 57.1
Gohir.D01G097233 Gossypium hirsutum HOM05D003004 ORTHO05D003860 7.9e-07 57.0 41 65.9


User provided reference genes

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