Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.1e-157 560.1 321 100.0
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.1e-157 560.1 321 100.0
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 3.0e-150 535.4 321 96.6
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 2.1e-148 529.3 322 95.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.6e-146 522.3 322 96.0
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 5.8e-146 521.2 321 93.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 7.6e-146 520.8 321 92.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 5.6e-141 504.6 322 91.9
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.8e-139 499.6 321 91.3
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 7.6e-138 494.2 321 88.2
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 4.6e-135 485.0 319 88.4
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 7.8e-135 484.2 321 86.9
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 2.3e-134 482.6 321 88.8
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 8.1e-132 474.2 313 87.5
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 8.4e-129 464.2 310 88.1
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-127 459.9 313 90.4
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 3.5e-127 458.8 311 89.1
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.5e-125 453.4 310 87.4
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.4e-123 446.8 321 82.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 7.4e-117 424.5 304 78.6
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 8.2e-116 421.0 319 78.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.8e-115 419.9 312 71.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 3.1e-115 419.1 312 71.8
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 4.5e-114 415.2 312 71.5
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.7e-113 413.3 317 75.1
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.7e-113 413.3 308 76.3
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.9e-113 412.5 309 71.2
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.4e-112 410.2 309 71.2
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.4e-112 410.2 309 71.2
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.2e-111 407.1 304 79.9
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.7e-111 406.0 313 69.6
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 6.0e-111 404.8 303 71.6
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 6.0e-111 404.8 308 76.9
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.3e-110 403.7 303 70.3
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.1e-109 400.6 306 69.9
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 3.3e-109 399.1 306 74.2
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.3e-109 399.1 319 70.8
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 4.3e-109 398.7 304 75.3
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 4.3e-109 398.7 305 69.8
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 7.4e-109 397.9 301 70.4
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 9.7e-109 397.5 313 74.1
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 9.7e-109 397.5 308 74.7
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.2e-108 396.4 318 66.7
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 2.8e-108 396.0 306 74.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.8e-108 396.0 303 69.3
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.8e-108 396.0 304 68.8
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 8.2e-108 394.4 294 78.2
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.1e-107 394.0 305 69.8
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-107 394.0 306 69.6
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.4e-107 393.7 302 70.2
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.8e-107 393.3 305 69.8
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.4e-107 392.9 321 72.9
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.4e-107 392.9 304 69.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 3.1e-107 392.5 318 66.7
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 4.1e-107 392.1 306 69.0
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.3e-107 391.7 305 68.9
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.3e-107 391.7 306 69.3
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 9.0e-107 391.0 305 68.2
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.2e-106 390.6 318 74.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.2e-106 390.6 319 66.5
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 2.0e-106 389.8 318 65.7
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 3.4e-106 389.0 318 66.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 3.4e-106 389.0 305 76.1
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.5e-106 388.7 306 68.6
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 5.9e-106 388.3 306 68.0
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.9e-106 388.3 301 68.1
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.7e-106 387.9 305 68.2
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.7e-106 387.9 300 69.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 7.7e-106 387.9 313 71.9
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.0e-105 387.5 306 68.3
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.2e-105 386.3 304 68.4
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.9e-105 386.0 304 68.4
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 3.8e-105 385.6 318 64.8
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 8.5e-105 384.4 299 74.2
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.1e-104 384.0 299 72.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.1e-104 384.0 304 68.4
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.1e-104 384.0 292 69.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.4e-104 383.6 299 68.6
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-104 383.6 328 71.6
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-104 383.6 325 72.6
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.4e-104 383.6 306 75.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.5e-104 382.9 300 68.7
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.5e-104 382.9 310 73.9
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.5e-104 381.7 305 70.8
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 7.2e-104 381.3 299 72.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.1e-103 379.8 304 69.1
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.1e-103 379.8 297 69.0
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 3.6e-103 379.0 303 71.9
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 6.1e-103 378.3 304 76.0
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 7.9e-103 377.9 304 66.4
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.9e-102 375.6 302 73.2
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.5e-101 373.6 313 64.5
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 5.7e-101 371.7 304 70.1
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.2e-100 369.8 304 65.1
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 2.2e-100 369.8 316 65.8
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.8e-100 369.4 303 73.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 3.7e-100 369.0 305 70.5
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.3e-100 368.2 305 69.8
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 3.1e-99 365.9 305 68.9
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 4.1e-99 365.5 303 65.0
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 5.3e-99 365.2 305 67.2
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.5e-98 362.1 301 68.8
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 5.9e-98 361.7 303 68.3
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.2e-97 359.8 307 62.9
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 5.0e-97 358.6 303 64.7
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 4.7e-95 352.1 297 64.0
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-94 350.5 318 61.6
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.8e-94 350.1 306 63.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 2.3e-94 349.7 297 65.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 3.3e-93 345.9 305 68.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.2e-89 333.2 317 59.0
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.5e-89 331.3 289 63.7
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 3.7e-84 315.8 245 67.3
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 3.1e-83 312.8 303 58.7
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.0e-81 307.8 219 86.3
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.2e-77 294.3 302 56.0
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.1e-75 287.7 214 71.5
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 3.1e-75 286.2 241 63.1
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 7.0e-75 285.0 315 54.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.2e-74 284.3 305 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.6e-66 257.3 300 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.9e-65 253.1 300 57.7
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 6.8e-62 241.9 318 53.5
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 4.4e-61 239.2 216 63.0
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 4.1e-59 232.6 240 62.9
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.3e-57 226.9 304 51.3
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 8.6e-57 224.9 297 55.2
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.4e-46 191.0 259 47.5
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.5e-45 187.6 317 43.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.2e-44 183.7 199 54.8
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-43 181.0 177 62.7
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.4e-43 181.0 177 62.7
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.4e-43 181.0 177 62.7
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.1e-40 171.4 320 39.4
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.6e-39 167.5 293 37.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-39 167.2 299 43.8
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 5.4e-35 152.5 130 65.4
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 7.8e-34 148.7 128 60.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 6.6e-33 145.6 126 59.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.7e-31 139.4 84 81.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.2e-28 130.6 102 68.6
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 6.4e-28 129.0 163 43.6
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.1e-27 128.3 77 88.3
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 4.3e-24 116.3 133 48.1
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.3e-23 114.8 69 82.6
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.1e-22 111.7 166 41.6
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 9.9e-21 105.1 67 77.6
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.9e-19 100.9 222 36.5
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-19 100.5 176 44.3
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.3e-17 94.7 74 70.3
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.3e-15 88.2 82 58.5
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 4.8e-15 86.3 71 60.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 6.9e-14 82.4 71 57.7
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 9.9e-13 78.6 78 50.0
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.8e-09 67.8 102 41.2
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-07 61.2 40 70.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.2e-07 59.3 96 38.5
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 1.1e-06 58.5 97 37.1


User provided reference genes

Program Settings