Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 4.7e-54 214.5 131 100.0
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 4.7e-54 214.5 131 100.0
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 6.2e-54 214.2 131 99.2
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 2.4e-50 202.2 98 99.0
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 4.6e-49 198.0 131 93.9
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 7.3e-47 190.7 98 89.8
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 7.3e-47 190.7 98 90.8
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 9.6e-47 190.3 98 89.8
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 2.4e-45 185.7 99 88.9
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 3.1e-45 185.3 98 88.8
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 3.1e-45 185.3 98 88.8
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 3.1e-45 185.3 130 71.5
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 6.8e-45 184.1 131 72.5
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 1.3e-43 179.9 98 85.7
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 2.9e-43 178.7 96 88.5
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.9e-42 176.0 98 84.7
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 5.4e-42 174.5 98 84.7
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 4.6e-41 171.4 98 83.7
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 4.6e-41 171.4 98 83.7
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 2.3e-40 169.1 98 82.7
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.8e-24 116.3 96 60.4
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 2.3e-24 115.9 93 63.4
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 4.3e-23 111.7 93 61.3
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.6e-22 109.8 70 71.4
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 2.8e-22 109.0 94 60.6
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.8e-22 109.0 68 72.1
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 3.7e-22 108.6 98 56.1
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 6.2e-22 107.8 80 71.2
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 6.2e-22 107.8 97 58.8
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 8.1e-22 107.5 72 69.4
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.1e-21 107.1 91 57.1
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.1e-21 107.1 68 72.1
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 1.1e-21 107.1 87 57.5
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.4e-21 106.7 77 63.6
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.4e-21 105.9 72 68.1
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 3.1e-21 105.5 77 63.6
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 4.0e-21 105.1 88 54.5
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.3e-21 104.8 66 75.8
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.9e-21 104.4 71 70.4
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 6.9e-21 104.4 112 51.8
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 9.0e-21 104.0 73 63.0
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 1.2e-20 103.6 72 66.7
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.2e-20 103.6 74 67.6
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-20 103.6 72 66.7
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.2e-20 103.6 72 66.7
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 1.2e-20 103.6 87 54.0
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 1.5e-20 103.2 77 67.5
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.0e-20 102.8 93 57.0
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 2.6e-20 102.4 73 61.6
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.6e-20 102.4 64 75.0
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 2.6e-20 102.4 65 67.7
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 2.6e-20 102.4 73 61.6
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.4e-20 102.1 71 64.8
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 4.5e-20 101.7 96 58.3
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.5e-20 101.7 70 67.1
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 7.6e-20 100.9 57 80.7
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 7.6e-20 100.9 62 75.8
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.3e-19 100.1 73 61.6
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 3.8e-19 98.6 61 70.5
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 3.8e-19 98.6 61 70.5
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 4.9e-19 98.2 74 62.2
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 4.9e-19 98.2 72 59.7
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 4.9e-19 98.2 75 62.7
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 6.5e-19 97.8 75 58.7
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 8.4e-19 97.4 88 56.8
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 8.4e-19 97.4 87 55.2
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 1.4e-18 96.7 93 59.1
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.2e-18 95.5 74 60.8
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 4.2e-18 95.1 93 53.8
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 4.2e-18 95.1 61 68.9
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 9.3e-18 94.0 92 57.6
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.6e-17 93.2 80 62.5
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 3.5e-17 92.0 64 57.8
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 7.9e-17 90.9 91 50.5
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.3e-16 89.4 91 50.5
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.9e-16 88.6 68 69.1
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 5.1e-16 88.2 85 54.1
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-15 87.0 57 64.9
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.5e-15 86.7 57 64.9
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.7e-15 84.7 57 63.2
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 9.6e-15 84.0 99 44.4
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 2.1e-14 82.8 67 55.2
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 2.1e-14 82.8 80 50.0
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.7e-14 82.0 75 50.7
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.4e-13 80.1 72 58.3
Sabra06G0036900 Salix brachista HOM05D002914 ORTHO05D003196 3.1e-13 79.0 75 56.0
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.0e-12 76.3 73 49.3
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-12 76.3 84 48.8
AUR62024432 Chenopodium quinoa HOM05D002914 ORTHO05D003196 5.9e-12 74.7 67 55.2
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 5.9e-12 74.7 79 48.1
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 7.6e-12 74.3 66 54.5
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.0e-11 73.9 74 51.4
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.3e-11 73.6 38 78.9
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.7e-11 73.2 91 44.0
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 5.0e-11 71.6 77 44.2
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 6.5e-11 71.2 74 43.2
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 8.4e-11 70.9 47 63.8
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 8.4e-11 70.9 66 43.9
arahy.Tifrunner.gnm1.ann1.TRJ4SS Arachis hypogaea HOM05D002914 ORTHO05D003196 1.1e-10 70.5 40 75.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.1e-10 70.5 69 44.9
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.1e-10 70.5 73 47.9
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.4e-10 70.1 77 45.5
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.4e-10 70.1 77 46.8
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.4e-10 70.1 77 46.8
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.9e-10 69.7 78 46.2
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.2e-10 68.9 72 50.0
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 3.2e-10 68.9 78 44.9
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 3.2e-10 68.9 82 43.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 4.2e-10 68.6 72 50.0
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 7.2e-10 67.8 72 50.0
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 9.3e-10 67.4 60 48.3
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.2e-09 67.0 73 46.6
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.6e-09 66.6 73 46.6
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.6e-09 66.6 77 45.5
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 2.1e-09 66.2 69 43.5
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.1e-09 66.2 66 50.0
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.1e-09 66.2 85 42.4
Atru.ctg24.30 Acer truncatum HOM05D002914 ORTHO05D003196 2.7e-09 65.9 42 71.4
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.7e-09 65.9 73 45.2
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 2.7e-09 65.9 78 38.5
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.5e-09 65.5 70 48.6
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 4.6e-09 65.1 66 47.0
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 6.1e-09 64.7 72 43.1
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 7.9e-09 64.3 66 45.5
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.0e-08 63.9 88 42.0
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 1.0e-08 63.9 88 43.2
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 1.0e-08 63.9 58 48.3
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 1.3e-08 63.5 80 42.5
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-08 63.5 73 43.8
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.0e-08 62.4 62 48.4
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 3.9e-08 62.0 66 43.9
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 3.9e-08 62.0 66 43.9
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.9e-08 62.0 60 45.0
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 5.1e-08 61.6 79 36.7
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 5.1e-08 61.6 68 42.6
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 5.1e-08 61.6 81 39.5
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 5.1e-08 61.6 80 41.2
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 6.7e-08 61.2 75 37.3
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 6.7e-08 61.2 76 43.4
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.7e-08 61.2 72 43.1
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 6.7e-08 61.2 84 35.7
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 6.7e-08 61.2 67 41.8
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 8.7e-08 60.8 79 39.2
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.7e-08 60.8 57 50.9
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.1e-07 60.5 79 39.2
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.1e-07 60.5 60 43.3
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 1.5e-07 60.1 70 42.9
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.9e-07 59.7 72 44.4
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.9e-07 59.7 59 44.1
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.5e-07 59.3 79 39.2
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.3e-07 58.9 83 37.3
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.3e-07 58.5 79 38.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.3e-07 58.5 66 42.4
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.3e-07 58.5 73 41.1
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 7.4e-07 57.8 83 36.1
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 7.4e-07 57.8 67 44.8
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.4e-07 57.8 76 38.2
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 7.4e-07 57.8 76 40.8
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 7.4e-07 57.8 70 41.4
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 9.7e-07 57.4 76 39.5
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 9.7e-07 57.4 73 41.1
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 9.7e-07 57.4 73 41.1
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.3e-06 57.0 63 42.9
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.6e-06 56.6 79 38.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.6e-06 56.6 83 38.6
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.6e-06 56.6 66 40.9
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.2e-06 56.2 83 37.3
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 2.2e-06 56.2 73 39.7
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 2.2e-06 56.2 80 33.8
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 2.8e-06 55.8 77 39.0
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 2.8e-06 55.8 66 40.9
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.8e-06 55.8 60 38.3
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 3.7e-06 55.5 83 36.1
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.7e-06 55.5 59 39.0
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 4.8e-06 55.1 39 53.8
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 4.8e-06 55.1 73 35.6
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.8e-06 55.1 73 37.0
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.3e-06 54.7 75 37.3
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.3e-06 54.7 79 36.7
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.3e-06 54.7 39 56.4
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 6.3e-06 54.7 39 56.4
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 8.2e-06 54.3 68 36.8


User provided reference genes

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