Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 6.7e-48 193.7 102 100.0
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 4.1e-45 184.5 102 95.1
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.9e-43 178.3 93 100.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 9.1e-37 156.8 90 88.9
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.0e-36 155.6 90 87.8
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.0e-36 155.6 88 90.9
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.5e-36 154.8 89 88.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 3.5e-36 154.8 89 88.8
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 7.7e-36 153.7 96 82.3
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 7.7e-36 153.7 88 89.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.0e-35 153.3 88 89.8
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.0e-35 153.3 88 89.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-35 152.5 89 87.6
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-35 152.5 89 87.6
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-35 152.5 89 87.6
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.7e-35 152.5 89 87.6
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.7e-35 152.5 89 87.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.5e-34 149.4 88 87.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-33 146.4 77 97.4
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.2e-33 146.4 77 97.4
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.6e-33 146.0 97 79.4
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-30 136.3 89 76.4
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-30 136.3 89 76.4
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 8.3e-30 133.7 88 78.4
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 8.3e-30 133.7 90 73.3
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.4e-29 132.9 89 75.3
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.4e-29 132.1 90 72.2
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 2.4e-29 132.1 88 75.0
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.1e-29 131.7 89 73.0
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.1e-29 131.7 90 71.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.1e-29 131.3 89 76.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 5.4e-29 131.0 88 73.9
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 7.0e-29 130.6 89 74.2
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 7.0e-29 130.6 91 70.3
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 9.1e-29 130.2 90 73.3
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.2e-28 129.8 88 75.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.2e-28 129.8 89 71.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.2e-28 129.8 88 73.9
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.6e-28 129.4 89 74.2
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.6e-28 129.4 90 70.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.6e-28 129.4 88 75.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.6e-28 129.4 91 69.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-28 129.0 90 70.0
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-28 129.0 90 70.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-28 129.0 90 70.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.7e-28 128.6 88 73.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.7e-28 128.6 91 70.3
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.7e-28 128.6 89 73.0
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.7e-28 128.6 89 73.0
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.7e-28 128.6 90 70.0
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.7e-28 128.6 91 70.3
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-28 128.3 90 73.3
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 3.5e-28 128.3 89 70.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 4.5e-28 127.9 91 69.2
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 4.5e-28 127.9 90 70.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.5e-28 127.9 90 70.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.5e-28 127.9 90 70.0
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.9e-28 127.5 90 68.9
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 7.7e-28 127.1 90 70.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.0e-27 126.7 90 72.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.0e-27 126.7 90 70.0
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-27 126.3 90 72.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.3e-27 126.3 90 68.9
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.3e-27 126.3 89 71.9
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-27 125.9 90 71.1
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-27 125.9 90 71.1
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 2.3e-27 125.6 97 62.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.3e-27 125.6 90 71.1
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 5.0e-27 124.4 89 68.5
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.0e-27 124.4 90 67.8
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 5.0e-27 124.4 90 67.8
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 5.0e-27 124.4 90 67.8
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 5.0e-27 124.4 89 70.8
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 6.5e-27 124.0 90 68.9
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 8.6e-27 123.6 84 73.8
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 8.6e-27 123.6 90 67.8
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 8.6e-27 123.6 91 67.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.9e-26 122.5 88 72.7
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.9e-26 122.5 89 70.8
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.9e-26 122.5 90 66.7
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.9e-26 122.5 90 68.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.5e-26 122.1 90 68.9
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 3.3e-26 121.7 88 68.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 4.2e-26 121.3 82 74.4
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 4.2e-26 121.3 82 73.2
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 4.2e-26 121.3 82 73.2
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 5.5e-26 120.9 90 66.7
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 7.2e-26 120.6 88 65.9
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.2e-25 119.8 91 67.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.8e-25 118.6 91 67.0
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 8.0e-25 117.1 88 67.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.0e-24 116.7 89 66.3
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.4e-24 116.3 89 65.2
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.4e-24 116.3 92 63.0
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.8e-24 115.9 89 66.3
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.3e-24 115.5 87 64.4
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 4.0e-24 114.8 88 68.2
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.0e-24 114.8 88 64.8
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 6.8e-24 114.0 88 68.2
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 8.9e-24 113.6 88 65.9
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.6e-23 112.1 79 73.4
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.6e-23 112.1 88 65.9
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.4e-23 111.7 88 64.8
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.5e-23 110.5 91 63.7
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 7.5e-23 110.5 87 60.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.6e-20 102.8 92 57.6
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.6e-20 102.8 74 71.6
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.6e-20 102.8 97 54.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.5e-18 95.5 70 70.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 4.7e-17 91.3 88 59.1
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 4.7e-17 91.3 88 59.1
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 4.7e-17 91.3 88 59.1
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 6.1e-17 90.9 91 56.0
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 4.0e-16 88.2 77 57.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 9.8e-15 83.6 75 56.0
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-14 82.8 48 85.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.7e-14 82.8 85 52.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 5.4e-13 77.8 77 51.9
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.7e-12 75.5 62 59.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 6.6e-11 70.9 70 58.6
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 6.6e-11 70.9 40 85.0
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.1e-10 70.1 50 62.0
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.9e-10 69.3 49 63.3
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 5.6e-10 67.8 78 47.4
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 9.5e-10 67.0 40 82.5
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 9.5e-10 67.0 40 82.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 9.5e-10 67.0 40 82.5
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.4e-08 63.2 40 75.0
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.3e-08 62.4 36 80.6
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 3.1e-08 62.0 43 67.4
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-07 60.1 48 62.5
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-07 60.1 48 62.5


User provided reference genes

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