Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.5e-253 879.0 444 100.0
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.5e-253 879.0 444 100.0
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.2e-237 826.2 427 96.5
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.4e-230 802.7 428 93.9
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 7.8e-226 786.9 427 93.2
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 5.4e-219 764.2 436 88.3
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 2.7e-218 761.9 435 87.1
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.7e-217 759.2 454 84.8
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 9.0e-214 746.9 435 85.5
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.6e-210 736.1 426 86.6
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 2.4e-198 695.7 434 80.4
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 5.3e-190 667.9 354 95.5
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-182 642.9 438 75.8
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 4.7e-162 575.1 403 70.7
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.2e-160 570.5 413 69.0
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 3.3e-160 568.9 397 71.0
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.7e-159 566.6 419 66.6
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 2.4e-158 562.8 404 68.8
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 5.3e-158 561.6 414 65.5
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.6e-157 560.1 396 69.7
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 7.7e-157 557.8 433 66.3
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.0e-156 557.4 392 69.6
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 2.9e-156 555.8 289 94.1
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 3.8e-156 555.4 287 94.8
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.5e-155 552.7 392 70.9
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 5.5e-155 551.6 390 70.3
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 5.5e-155 551.6 403 68.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 5.5e-155 551.6 390 69.0
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 7.2e-155 551.2 388 70.1
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.2e-154 550.4 393 69.5
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 2.1e-154 549.7 394 68.8
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 6.1e-154 548.1 447 62.0
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 8.0e-154 547.7 410 67.3
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.0e-153 547.4 393 69.5
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.0e-153 547.4 391 69.1
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.8e-153 546.6 393 69.7
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 3.0e-153 545.8 390 68.2
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.2e-153 545.0 408 65.2
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 5.2e-153 545.0 425 66.1
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.6e-152 542.7 393 68.7
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.2e-151 539.7 390 67.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 2.8e-151 539.3 392 67.6
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 2.8e-151 539.3 422 63.7
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 6.3e-151 538.1 394 66.0
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 8.3e-151 537.7 395 67.1
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.1e-150 537.3 404 67.1
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.4e-150 537.0 386 68.7
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 5.4e-150 535.0 395 66.3
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 1.6e-149 533.5 412 64.3
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 2.0e-149 533.1 394 66.8
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 7.7e-149 531.2 394 67.3
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 7.7e-149 531.2 392 66.6
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.0e-148 530.8 391 64.5
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.3e-148 530.4 397 67.0
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 8.6e-148 527.7 405 64.7
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 8.6e-148 527.7 396 66.4
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.1e-147 527.3 403 64.5
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.5e-147 526.9 398 66.3
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 5.5e-147 525.0 393 65.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 9.5e-147 524.2 415 63.1
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.2e-146 523.9 392 63.3
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 1.6e-146 523.5 419 64.2
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.6e-146 523.5 390 65.9
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 2.8e-146 522.7 396 65.2
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 3.6e-146 522.3 390 66.4
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 8.0e-146 521.2 390 66.2
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 1.8e-145 520.0 391 67.3
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 4.0e-145 518.8 413 63.2
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 5.2e-145 518.5 422 59.7
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 6.8e-145 518.1 394 64.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.2e-144 517.3 396 64.1
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.5e-144 516.9 391 66.2
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 4.4e-144 515.4 392 63.8
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.4e-144 515.4 396 63.9
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 5.7e-144 515.0 430 60.0
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 9.8e-144 514.2 455 58.2
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.7e-143 512.3 393 64.9
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 3.1e-142 509.2 426 59.4
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 3.1e-142 509.2 395 64.8
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 9.2e-142 507.7 417 61.9
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.5e-139 500.4 404 62.1
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.9e-139 500.0 399 61.7
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 2.3e-137 493.0 385 64.7
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 4.0e-137 492.3 392 64.0
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 9.5e-131 471.1 414 60.4
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.2e-130 470.7 372 64.2
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 2.6e-128 463.0 395 59.5
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 7.0e-126 454.9 417 54.4
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.2e-125 454.1 328 67.4
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 2.8e-122 443.0 437 53.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.2e-120 437.6 390 57.4
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 2.0e-120 436.8 331 65.0
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.6e-120 436.4 366 60.9
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.4e-118 430.6 235 88.9
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.2e-117 427.6 385 53.8
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.9e-116 422.5 329 61.1
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 2.1e-109 400.2 308 65.6
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 2.3e-108 396.7 312 64.4
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 7.3e-107 391.7 301 65.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.3e-106 391.0 356 54.2
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.2e-104 384.4 414 48.3
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 1.5e-104 384.0 291 64.9
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 5.8e-104 382.1 283 65.7
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.6e-101 374.0 324 61.7
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-97 360.5 239 74.9
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.8e-96 355.5 330 56.1
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.2e-86 322.8 188 81.4
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.2e-85 321.2 436 43.1
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 6.7e-84 315.5 388 46.1
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 2.7e-77 293.5 213 65.3
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.8e-76 290.8 241 61.8
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.1e-65 253.4 353 43.9
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 3.2e-54 216.9 160 67.5
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 8.0e-53 212.2 161 65.2
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 4.0e-52 209.9 148 68.9
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 8.8e-52 208.8 157 63.7
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.6e-51 207.2 397 38.0
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 2.6e-51 207.2 179 60.3
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.6e-48 198.0 277 42.6
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.6e-37 161.4 145 57.9
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 1.3e-34 151.8 436 28.7
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.5e-32 143.3 120 60.0
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.7e-31 141.4 416 28.8
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 8.6e-31 139.0 103 62.1
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.1e-30 138.7 413 28.1
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.1e-30 138.7 413 28.1
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.5e-30 138.3 427 28.6
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 4.4e-27 126.7 81 71.6
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 9.2e-25 119.0 395 27.1
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.2e-21 108.6 114 50.9
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 8.0e-21 105.9 71 67.6
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.0e-20 105.5 65 75.4
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 2.2e-18 97.8 64 76.6
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.2e-17 94.0 236 34.3
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.2e-16 92.0 66 71.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 2.3e-15 87.8 123 42.3
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 3.1e-12 77.4 76 52.6
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 6.0e-08 63.2 59 59.3


User provided reference genes

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