Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.1e-165 586.6 306 100.0
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.1e-165 586.6 306 100.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 2.5e-162 575.5 306 98.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 9.1e-157 557.0 305 96.4
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.0e-152 543.5 306 94.4
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 3.0e-152 542.0 306 93.5
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 5.9e-148 527.7 306 90.8
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.0e-147 526.9 306 90.5
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.5e-147 523.9 306 89.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.5e-146 522.3 306 90.8
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 7.2e-146 520.8 306 89.5
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 7.2e-146 520.8 306 88.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.5e-138 495.7 306 84.6
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 4.0e-128 461.8 306 80.7
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.7e-126 456.4 307 79.8
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.6e-123 444.5 307 79.2
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.1e-122 443.7 307 79.2
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.6e-122 441.4 306 74.2
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.1e-121 439.5 306 74.2
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.0e-120 435.3 307 74.3
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 4.0e-120 435.3 307 74.3
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.2e-120 434.9 306 74.8
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.8e-120 434.5 311 76.8
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 6.8e-120 434.5 306 72.9
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 8.9e-120 434.1 306 72.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 2.6e-119 432.6 306 74.2
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.6e-119 432.6 307 72.3
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.6e-119 432.6 307 72.3
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.4e-119 431.8 306 76.5
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.3e-118 430.3 309 75.1
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.7e-118 429.9 306 76.1
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.7e-118 429.9 306 72.5
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.9e-118 429.1 308 74.7
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.9e-118 429.1 306 72.5
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.7e-118 428.7 306 72.2
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 8.3e-118 427.6 306 76.5
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.1e-117 427.2 306 74.5
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.9e-117 426.4 305 74.4
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.4e-117 426.0 306 72.5
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 2.4e-117 426.0 308 73.7
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.2e-116 423.7 307 72.3
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.6e-116 423.3 306 73.2
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.0e-116 422.9 306 75.2
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.5e-116 422.2 305 74.8
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 4.6e-116 421.8 306 71.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.7e-115 419.9 306 71.2
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.3e-115 419.5 306 71.9
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.9e-115 418.7 306 74.2
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 3.9e-115 418.7 306 72.2
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 6.6e-115 417.9 306 71.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 6.6e-115 417.9 306 71.6
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 8.6e-115 417.5 310 73.5
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.1e-114 417.2 306 71.2
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.5e-114 416.8 308 71.8
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.5e-114 416.8 332 67.2
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.5e-114 416.8 307 71.0
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.9e-114 416.4 308 70.8
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 3.3e-114 415.6 306 72.9
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.3e-114 414.5 306 71.9
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.2e-113 413.7 306 70.3
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.8e-113 412.5 307 70.4
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.1e-112 410.6 306 70.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.1e-112 410.6 306 69.9
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.4e-112 410.2 306 71.9
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.4e-112 410.2 306 69.9
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.4e-112 410.2 306 70.3
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.1e-112 409.1 300 74.3
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 3.1e-112 409.1 317 67.5
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.0e-112 408.7 324 66.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 4.0e-112 408.7 327 69.4
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 5.2e-112 408.3 301 74.4
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.5e-111 406.8 306 68.6
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.0e-111 406.4 306 70.3
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.6e-111 406.0 303 71.0
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 7.5e-111 404.4 306 67.0
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 4.9e-110 401.7 351 65.5
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.4e-110 401.4 305 71.1
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.1e-109 398.7 309 67.6
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 4.1e-109 398.7 304 68.8
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.1e-108 396.4 305 68.9
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.7e-108 396.0 306 67.3
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.0e-108 394.8 323 65.6
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 6.0e-108 394.8 307 67.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 6.0e-108 394.8 307 66.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 7.8e-108 394.4 306 67.3
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 2.3e-107 392.9 298 70.8
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.3e-107 392.9 307 66.4
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.9e-107 392.1 306 66.7
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 6.6e-107 391.3 303 67.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.5e-106 390.2 298 69.8
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.5e-106 389.4 304 66.8
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 2.5e-106 389.4 307 66.1
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.8e-105 386.0 307 66.4
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 8.1e-105 384.4 307 65.1
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 5.2e-104 381.7 306 65.7
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 4.4e-103 378.6 352 57.1
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 7.5e-103 377.9 307 64.8
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 7.1e-101 371.3 306 64.4
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.6e-100 370.2 308 64.0
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 4.6e-100 368.6 306 66.0
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.0e-99 367.5 306 66.0
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 2.5e-98 362.8 283 68.2
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 4.3e-98 362.1 307 61.9
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 7.3e-98 361.3 306 63.1
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.2e-97 360.5 307 63.5
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 5.2e-96 355.1 327 59.3
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 6.8e-96 354.8 308 62.7
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 8.9e-96 354.4 279 66.7
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.4e-95 352.1 238 74.4
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 5.8e-95 351.7 241 73.9
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 3.8e-94 349.0 307 59.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 2.4e-93 346.3 295 62.7
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 4.6e-92 342.0 278 67.3
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.4e-88 330.5 307 61.2
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.4e-88 329.7 243 68.7
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 3.2e-85 319.3 321 57.9
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 7.8e-84 314.7 196 80.6
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.3e-83 313.2 307 59.0
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 6.6e-83 311.6 314 55.7
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.5e-82 309.7 306 58.8
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.1e-80 304.3 209 74.2
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.4e-80 303.9 309 55.7
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 2.9e-78 296.2 313 54.0
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.1e-77 294.3 291 60.8
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.3e-75 287.3 306 54.2
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.8e-75 287.0 306 54.2
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.8e-75 287.0 265 60.0
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 5.1e-75 285.4 224 70.1
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 8.1e-73 278.1 283 54.4
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.2e-70 270.0 261 55.6
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 7.1e-69 265.0 217 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 9.3e-69 264.6 223 60.5
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.6e-68 263.8 306 49.7
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.1e-68 263.5 218 64.7
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.5e-68 262.7 381 43.8
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 8.2e-65 251.5 317 44.2
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 6.9e-64 248.4 340 46.2
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.6e-63 246.5 297 48.5
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 3.4e-63 246.1 218 61.9
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.3e-62 244.2 302 49.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.1e-60 235.3 207 59.9
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.8e-56 223.8 179 68.2
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 7.7e-55 218.4 333 41.1
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.2e-46 190.3 149 67.1
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.8e-43 180.6 342 35.4
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 9.7e-34 148.3 90 81.1
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 4.1e-32 142.9 90 75.6
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.7e-30 137.5 307 32.6
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.6e-28 131.0 241 42.3
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.3e-27 127.1 280 38.2
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.2e-26 124.8 84 66.7
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.7e-20 102.8 111 56.8
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.5e-18 97.8 60 75.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 2.6e-18 97.1 331 27.8
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 8.3e-17 92.0 92 57.6
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.5e-15 86.7 56 75.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.9e-13 80.9 169 37.3
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.8e-07 58.9 42 59.5
SEGI_36601 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.3e-06 57.4 42 61.9
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.9e-06 56.6 38 60.5
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 5.0e-06 56.2 117 37.6


User provided reference genes

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